PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G01720.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 335aa MW: 36052 Da PI: 5.2724

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G01720.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.7	2.4e-08	13	56	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 ++C+ + + + ++C ++ lC++C H + H++vp ONIVA09G01720.1 13 QRCDSCRSAPCAFYCLADSAALCATCDADVH-SvnplarrHRRVP 56 79*****************************.4478888899887 PP
2	CCT	69.1	1.2e-23	268	311	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++ RY+eKrktR+FeK+irY+sRKa+Ae+RpR+KGrF+k++ ONIVA09G01720.1 268 REARVHRYREKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRS 311 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.2E-14	10	57	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.2E-6	13	56	IPR000315	B-box-type zinc finger
CDD	cd00021	5.07E-11	14	57	No hit	No description
PROSITE profile	PS50119	11.021	15	57	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.797	268	310	IPR010402	CCT domain
Pfam	PF06203	1.5E-17	268	310	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MLKLEPEFPG LPQRCDSCRS APCAFYCLAD SAALCATCDA DVHSVNPLAR RHRRVPMGVV 60 AAPGAGGAFV VRPAGGVNSS WPIREGRRCD YDDDDADAAG EEDEEATSWL LFDPLKDSSD 120 QGLPPFGDAL VADFLNLGGG AGEKEDASSG KDCSSSHGKS SEGSHEFAVP GEPVPERQGF 180 GAVSMDITDY DASNFRRGYS FGASLGHSVS MSSLENMSTV PDCGVPDITT SYLRSSKSTI 240 DLFTAAAGSP VAAHSIMSPP QFMGAIDREA RVHRYREKRK TRRFEKTIRY ASRKAYAETR 300 PRIKGRFAKR SDTDLEVDQY FSTTADSSCG VVPTF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as repressor of flowering under SD conditions, independently of HD1, EHD1, MADS50 and MADS51. Controls flowering time under SD conditions by negatively regulating the expression of HD3A and FTL. {ECO:0000269\|PubMed:18449564}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases after the beginning of the dark period, peaks at dawn, stays high four hours and gradually decreases until sunset. {ECO:0000269\|PubMed:18449564}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT835894	0.0	CT835894.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN024B12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612389.1	0.0	zinc finger protein CO3-like
Swissprot	O82117	0.0	CO3_ORYSJ; Zinc finger protein CO3
TrEMBL	A0A0E0IGK8	0.0	A0A0E0IGK8_ORYNI; Uncharacterized protein
STRING	ONIVA09G01720.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14358	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15850.1	1e-17	CONSTANS-like 1