PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G04180.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 235aa    MW: 26271.8 Da    PI: 7.6045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G04180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17114161354
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      y+G+r+++ +grW++eIrdp+    +  r++lg+f+tae+Aa+a++   ++++
  ONIVA09G04180.1 114 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIY 161
                      9*******.**********75....44*******************8777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.3E-37113176IPR001471AP2/ERF domain
PROSITE profilePS5103222.484113170IPR001471AP2/ERF domain
CDDcd000181.34E-25114169No hitNo description
PRINTSPR003673.7E-11114125IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-20114171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-30114171IPR001471AP2/ERF domain
PfamPF008472.7E-9114154IPR001471AP2/ERF domain
PRINTSPR003673.7E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRRRVSSSPS SSSSSSPARH HKARRSRRKL VADEDWEAAF REFLSRDDDD DDDDDDGHHV  60
VVAPLIRSSN KCVHGHEVVA STVGGGASGG RRRADDDDGE RRRRRRRERR SYPYRGIRQR  120
PWGRWASEIR DPVKGIRVWL GTFDTAEGAA RAYDDEVRRI YGGNAKTNFP PSPPPPEQPA  180
APVAAERSPS TTTTTTPSAE DSGDSRILIE CCSDDLMDSL LAAFDMTTGD MRFWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-18114170663ATERF1
3gcc_A7e-18114170663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190106RRRADDDDGERRRRRRR
299107ERRRRRRRE
3100106RRRRRRR
4100107RRRRRRRE
5101108RRRRRRER
6101109RRRRRRERR
7102109RRRRRERR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4539650.0DQ453965.1 Oryza sativa (indica cultivar-group) clone BAC 118K20 chromosome 9 map Sub1 locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651344.15e-98ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0IHG81e-167A0A0E0IHG8_ORYNI; Uncharacterized protein
TrEMBLQ0N4T71e-167Q0N4T7_ORYSI; ERF protein
STRINGONIVA09G04180.11e-167(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP179721010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.17e-26ERF family protein