PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G06790.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 1212aa    MW: 137271 Da    PI: 5.3313
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G06790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.72e-2025119186
         trihelix   1 rWtkqevlaLiearremeerlr...rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                      rWt+qe+l+Lie++  +e r +   r +          + +++W++v++++r++g+er+  qC+++w+nl+++y ki+++e++ + +     p 
  ONIVA09G06790.1  25 RWTRQEILVLIEGKHAVEGRGSgmgR-AaaasygeaaaALETKWAAVAEFCRRHGVERGTAQCRKRWSNLARDYNKIERWERGAAGGW---EPS 114
                      8**************99999884332.03455555655889*****************************************864333...366 PP

         trihelix  82 fdqle 86 
                      f +++
  ONIVA09G06790.1 115 FWDMH 119
                      66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2022594IPR017877Myb-like domain
PfamPF138372.1E-925119No hitNo description
Gene3DG3DSA:1.10.10.606.3E-42594IPR009057Homeodomain-like
SuperFamilySSF525401.76E-53443736IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009319.6E-49492764IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3002.9E-9493651IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.4E-11496511No hitNo description
PRINTSPR003641.4E-11571585No hitNo description
PRINTSPR003641.4E-11672686No hitNo description
SuperFamilySSF520583.06E-29796963IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.3E-16813952IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.5E-1010051199IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520583.06E-2910251197IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.4E-1111331149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1212 aa     Download sequence    Send to blast
MSGDPAGAAN AAAAASAAKP PRLPRWTRQE ILVLIEGKHA VEGRGSGMGR AAAASYGEAA  60
AALETKWAAV AEFCRRHGVE RGTAQCRKRW SNLARDYNKI ERWERGAAGG WEPSFWDMHN  120
DARREMRLPG FFDREVYDIL DSRRLAFVNE MVFDSGRPAP EELMFSDDEE EPPPPPVNPA  180
GSTVEEEEVE DTEVFDSGRP AAEESLFSDD EEEDWVFQDD EEEEAPPVTA AASASPAQAP  240
HGQLIALPIS EKSEASRHQR TEQRESFSSM EPLSYTTPEM KMETDAVQLN CDWPMQTLQG  300
HGSSEPSEKS AVQQSDDTNS RLHRDKQWAV QDKRLVLQRT LTEMHTFIKH AEWWFHKDVF  360
AQLLQDAKDA VNCAEDLLDE INYHEFQNKV EGHAVLFHVQ DYHETKIDKI QRKLEHLVRQ  420
MEQLGLYDER QQLIIESISR EDNLFAEEQT IFGRQKEMSE LIELIVLQEN SPTDKQVTEV  480
HAVPDCKRAK LENVSVLPIV GSGGVGKTTL ANLVFNERSV RDHFDLLIWI CVSDGFDEKK  540
LMKRLAWSVA ENEMKTDDLG CLQRILTNGI IHHTRRVLLV LDDVQTDACR EDCHGWKNFL  600
APLKYARSGS MVLVTTRYHR VAERVGTLKH MFLEGLPEET IWEFFRMLTF GSRNSNSNAV  660
LEPIGRSIVA RLDGSSLGIK IIGRLLSLKL DAKYWKIILE SELWGWPHQE EASIFTALQL  720
SYQYLPFHLK RCFSFCSLYP RGYEFDAETL VDSWVAVGFV MPSRSILAVD IGHVYFNQLY  780
VARNDCFIIK SRCGMSRIPP KVRHVSILGN GELSSTDIEC LNTYKTLRSI VCIGVGCDII  840
TNSVLETWFD HLTRIRMLRF ISCRLKELPC NVGKLIHLRY LDISACDFDK LPTDLFCRLY  900
KLEILDAQNC TLHAVPKDII KLVNLQRLRL KDDLISQLGR VPEELKNMNH LHGGLEIDGL  960
RNVTSREEVA GAELAKKIYF DTLVLKWHES IRPQKHNSTK EMEVLEALRP SSNIKHLEVK  1020
FYMGDGLSPM WLRHDELSSL ASLSINSCPN TTTLFLIEPS ETGSSRSSSI SNCEELASLP  1080
TNNLVHFVHL EDLEICHCWN LNWEPGLALP PSLKSLKLEA CGEFSDSTLS CLHNLTALTI  1140
LNLRFCPSIE SISAQIWSGL WSIENLKIVC CQGLVTVGGS ESIAGIKNVD IRHCSKLQDL  1200
EQPFRSGQAD SQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-354881047176773Disease resistance RPP13-like protein 4
6j5t_F2e-354881047176773Disease resistance RPP13-like protein 4
6j5t_G2e-354881047176773Disease resistance RPP13-like protein 4
6j5t_L2e-354881047176773Disease resistance RPP13-like protein 4
6j5t_O2e-354881047176773Disease resistance RPP13-like protein 4
6j5u_A2e-354881047176773Disease resistance RPP13-like protein 4
6j5v_A2e-354881047176773Disease resistance RPP13-like protein 4
6j5w_A2e-354881047176773Disease resistance RPP13-like protein 4
6j6i_C2e-354881047176773Disease resistance RPP13-like protein 4
6j6i_F2e-354881047176773Disease resistance RPP13-like protein 4
6j6i_G2e-354881047176773Disease resistance RPP13-like protein 4
6j6i_L2e-354881047176773Disease resistance RPP13-like protein 4
6j6i_O2e-354881047176773Disease resistance RPP13-like protein 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054220.0AP005422.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0441A12.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612318.10.0putative disease resistance protein RGA3
TrEMBLA0A0E0IIE90.0A0A0E0IIE9_ORYNI; Uncharacterized protein
STRINGONIVA09G06790.40.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-31Trihelix family protein