PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G06790.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 1226aa    MW: 139397 Da    PI: 6.1255
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G06790.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.16.1e-1532892686
         trihelix 26 lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                     + +++W++v++++r++g+er+  qC+++w+nl+++y ki+++e++ + +     p f +++
  ONIVA09G06790.2 32 ALETKWAAVAEFCRRHGVERGTAQCRKRWSNLARDYNKIERWERGAAGGW---EPSFWDMH 89
                     5589****************************************864333...36666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-83589No hitNo description
SuperFamilySSF525401.8E-53371664IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009319.7E-49420692IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3002.9E-9421579IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003647.0E-12424439No hitNo description
PRINTSPR003647.0E-12499513No hitNo description
PRINTSPR003647.0E-12600614No hitNo description
SuperFamilySSF520582.44E-36724926IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.9E-16767907IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.108.8E-149901213IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.44E-3610031212IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003647.0E-1210741090No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1226 aa     Download sequence    Send to blast
MSGDPAGAAN AAAAASAAKP PRLPRYGEAA AALETKWAAV AEFCRRHGVE RGTAQCRKRW  60
SNLARDYNKI ERWERGAAGG WEPSFWDMHN DARREMRLPG FFDREVYDIL DSRRLAFVNE  120
MVFDSGRPAA EESLFSDDEE EDWVFQDDEE EEAPPVTAAA SASPAQAPHG QLIALPISEK  180
SEASRHQRTE QRESFSSMEP LSYTTPEMKM ETDAVQLNCD WPMQTLQGHG SSEPSEKSAV  240
QQSDDTNSRL HRDKQWAVQD KRLVLQRTLT EMHTFIKHAE WWFHKDVFAQ LLQDAKDAVN  300
CAEDLLDEIN YHEFQNKVEG HAVLFHVQDY HETKIDKIQR KLEHLVRQME QLGLYDERQQ  360
LIIESISRED NLFAEEQTIF GRQKEMSELI ELIVLQENSP TDKQVTEVHA VPDCKRAKLE  420
NVSVLPIVGS GGVGKTTLAN LVFNERSVRD HFDLLIWICV SDGFDEKKLM KRLAWSVAEN  480
EMKTDDLGCL QRILTNGIIH HTRRVLLVLD DVQTDACRED CHGWKNFLAP LKYARSGSMV  540
LVTTRYHRVA ERVGTLKHMF LEGLPEETIW EFFRMLTFGS RNSNSNAVLE PIGRSIVARL  600
DGSSLGIKII GRLLSLKLDA KYWKIILESE LWGWPHQEEA SIFTALQLSY QYLPFHLKRC  660
FSFCSLYPRG YEFDAETLVD SWVAVGFVMP SRSILAVDIG HVYFNQLVSR SFFQRSPTSS  720
RYVIHDLLHD MAQYVARNDC FIIKSRCGMS RIPPKVRHVS ILGNGELSST DIECLNTYKT  780
LRSIVCIGVG CDIITNSVLE TWFDHLTRIR MLRFISCRLK ELPCNVGKLI HLRYLDISAC  840
DFDKLPTDLF CRLYKLEILD AQNCTLHAVP KDIIKLVNLQ RLRLKDDLIS QLGRVPEVGK  900
LTLLQNMPYY AVDDKPGRGI QELKNMNHLH GGLEIDGLRN VTSREEVAGA ELAKKIYFDT  960
LVLKWHESIR PQKHNSTKEM EVLEALRPSS NIKHLEVKFY MGDGLSPMWL RHDELSSLAS  1020
LSINSCPNTT TLFLIEPSET GSSRSSSVSF QSLTKLSITW CRSLTSLDNF LQPECLPMIK  1080
VIQISNCEEL ASLPTNNLVH FVHLEDLEIC HCWNLNWEPG LALPPSLKSL KLEACGEFSD  1140
STLSCLHNLT ALTILNLRFC PSIESISAQI WSGLWSIENL KIVCCQGLVT VGGSESIAGI  1200
KNVDIRHCSK LQDLEQPFRS GQADSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C4e-414161098176837Disease resistance RPP13-like protein 4
6j5t_F4e-414161098176837Disease resistance RPP13-like protein 4
6j5t_G4e-414161098176837Disease resistance RPP13-like protein 4
6j5t_L4e-414161098176837Disease resistance RPP13-like protein 4
6j5t_O4e-414161098176837Disease resistance RPP13-like protein 4
6j5u_A4e-414161098176837Disease resistance RPP13-like protein 4
6j5v_A4e-414161098176837Disease resistance RPP13-like protein 4
6j5w_A4e-414161098176837Disease resistance RPP13-like protein 4
6j6i_C4e-414161098176837Disease resistance RPP13-like protein 4
6j6i_F4e-414161098176837Disease resistance RPP13-like protein 4
6j6i_G4e-414161098176837Disease resistance RPP13-like protein 4
6j6i_L4e-414161098176837Disease resistance RPP13-like protein 4
6j6i_O4e-414161098176837Disease resistance RPP13-like protein 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054220.0AP005422.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0441A12.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612318.10.0putative disease resistance protein RGA3
TrEMBLA0A0E0IIF00.0A0A0E0IIF0_ORYNI; Uncharacterized protein
STRINGONIVA09G06790.40.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.18e-25Trihelix family protein