 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | ONIVA09G06790.4 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
| Family | Trihelix | ||||||||
| Protein Properties | Length: 1298aa MW: 147113 Da PI: 5.5569 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 64.6 | 2.2e-20 | 25 | 119 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlr...rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81
rWt+qe+l+Lie++ +e r + r + + +++W++v++++r++g+er+ qC+++w+nl+++y ki+++e++ + + p
ONIVA09G06790.4 25 RWTRQEILVLIEGKHAVEGRGSgmgR-AaaasygeaaaALETKWAAVAEFCRRHGVERGTAQCRKRWSNLARDYNKIERWERGAAGGW---EPS 114
8**************99999884332.03455555655889*****************************************864333...366 PP
trihelix 82 fdqle 86
f +++
ONIVA09G06790.4 115 FWDMH 119
66665 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 2.3E-9 | 25 | 119 | No hit | No description |
| PROSITE profile | PS50090 | 6.202 | 25 | 94 | IPR017877 | Myb-like domain |
| Gene3D | G3DSA:1.10.10.60 | 6.8E-4 | 25 | 94 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF52540 | 1.99E-53 | 443 | 736 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 1.1E-48 | 492 | 764 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 3.2E-9 | 493 | 651 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| PRINTS | PR00364 | 8.7E-12 | 496 | 511 | No hit | No description |
| PRINTS | PR00364 | 8.7E-12 | 571 | 585 | No hit | No description |
| PRINTS | PR00364 | 8.7E-12 | 672 | 686 | No hit | No description |
| SuperFamily | SSF52058 | 2.27E-36 | 796 | 998 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 2.1E-16 | 839 | 979 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 2.27E-36 | 1075 | 1284 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 1.4E-13 | 1086 | 1285 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 8.7E-12 | 1146 | 1162 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1298 aa Download sequence Send to blast |
MSGDPAGAAN AAAAASAAKP PRLPRWTRQE ILVLIEGKHA VEGRGSGMGR AAAASYGEAA 60 AALETKWAAV AEFCRRHGVE RGTAQCRKRW SNLARDYNKI ERWERGAAGG WEPSFWDMHN 120 DARREMRLPG FFDREVYDIL DSRRLAFVNE MVFDSGRPAP EELMFSDDEE EPPPPPVNPA 180 GSTVEEEEVE DTEVFDSGRP AAEESLFSDD EEEDWVFQDD EEEEAPPVTA AASASPAQAP 240 HGQLIALPIS EKSEASRHQR TEQRESFSSM EPLSYTTPEM KMETDAVQLN CDWPMQTLQG 300 HGSSEPSEKS AVQQSDDTNS RLHRDKQWAV QDKRLVLQRT LTEMHTFIKH AEWWFHKDVF 360 AQLLQDAKDA VNCAEDLLDE INYHEFQNKV EGHAVLFHVQ DYHETKIDKI QRKLEHLVRQ 420 MEQLGLYDER QQLIIESISR EDNLFAEEQT IFGRQKEMSE LIELIVLQEN SPTDKQVTEV 480 HAVPDCKRAK LENVSVLPIV GSGGVGKTTL ANLVFNERSV RDHFDLLIWI CVSDGFDEKK 540 LMKRLAWSVA ENEMKTDDLG CLQRILTNGI IHHTRRVLLV LDDVQTDACR EDCHGWKNFL 600 APLKYARSGS MVLVTTRYHR VAERVGTLKH MFLEGLPEET IWEFFRMLTF GSRNSNSNAV 660 LEPIGRSIVA RLDGSSLGIK IIGRLLSLKL DAKYWKIILE SELWGWPHQE EASIFTALQL 720 SYQYLPFHLK RCFSFCSLYP RGYEFDAETL VDSWVAVGFV MPSRSILAVD IGHVYFNQLV 780 SRSFFQRSPT SSRYVIHDLL HDMAQYVARN DCFIIKSRCG MSRIPPKVRH VSILGNGELS 840 STDIECLNTY KTLRSIVCIG VGCDIITNSV LETWFDHLTR IRMLRFISCR LKELPCNVGK 900 LIHLRYLDIS ACDFDKLPTD LFCRLYKLEI LDAQNCTLHA VPKDIIKLVN LQRLRLKDDL 960 ISQLGRVPEV GKLTLLQNMP YYAVDDKPGR GIQELKNMNH LHGGLEIDGL RNVTSREEVA 1020 GAELAKKIYF DTLVLKWHES IRPQKHNSTK EMEVLEALRP SSNIKHLEVK FYMGDGLSPM 1080 WLRHDELSSL ASLSINSCPN TTTLFLIEPS ETGSSRSSSV SFQSLTKLSI TWCRSLTSLD 1140 NFLQPECLPM IKVIQISNCE ELASLPTNNL VHFVHLEDLE ICHCWNLNWE PGLALPPSLK 1200 SLKLEACGEF SDSTLSCLHN LTALTILNLR FCPSIESISA QIWSGLWSIE NLKIVCCQGL 1260 VTVGGSESIA GIKNVDIRHC SKLQDLEQPF RSGQADSQ |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 7e-41 | 488 | 1170 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP005422 | 0.0 | AP005422.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0441A12. | |||
| GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015612318.1 | 0.0 | putative disease resistance protein RGA3 | ||||
| TrEMBL | A0A0E0IIF2 | 0.0 | A0A0E0IIF2_ORYNI; Uncharacterized protein | ||||
| STRING | ONIVA09G06790.4 | 0.0 | (Oryza nivara) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP14099 | 6 | 9 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G33550.1 | 1e-31 | Trihelix family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|