PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G10550.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 236aa MW: 24196.2 Da PI: 6.6691

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G10550.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	27.9	7.3e-09	150	180	29	59
YABBY 29 tslfkvvtvrCGhCtsllsvnlakasqllaa 59 tslfk+v vrCGhC+sll+vn++ ++a ONIVA09G10550.2 150 TSLFKTVMVRCGHCSSLLTVNIRGLLLPTSA 180 89********************987765555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.0E-7	150	180	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEPWRQGGAV GCGRRPAGEQ LGTGVGSTRR RRPHPQPLQF PPASATSVFA CHCRMVDPTS 60 RMRIRPARDG HIAAVVDASN GSESWAAASA EEHPSSRSDE QSEEADEDGD GNAEAVGAAV 120 LLFSPPPPAV AVATLLLFPS SDAGAAAAGT SLFKTVMVRC GHCSSLLTVN IRGLLLPTSA 180 AATVATAPPP PPPPPPPAAA HFPHSLNLAP PANPPHHHSL LDEISTASSP TQLLAA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005420	0.0	AP005420.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0418B08.
GenBank	AP005568	0.0	AP005568.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1299_A11.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q8L556	7e-19	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A0E0IJS0	1e-165	A0A0E0IJS0_ORYNI; Uncharacterized protein
STRING	ONIVA09G10550.2	1e-166	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18934	3	4

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]