PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G10950.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 407aa    MW: 43759.2 Da    PI: 7.7997
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G10950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-12102144246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T++Ed l+  +    G++ W+tIa+ ++ gRt++++k++w++
  ONIVA09G10950.1 102 GGFTEDEDRLICSLYIAIGSR-WATIAAQLP-GRTDNDIKNYWNS 144
                      569******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.687995IPR017877Myb-like domain
SMARTSM007175.3E-51397IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-201547IPR009057Homeodomain-like
SuperFamilySSF466896.42E-2181149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2082102IPR009057Homeodomain-like
PROSITE profilePS5129420.43296150IPR017930Myb domain
SMARTSM007176.7E-11100148IPR001005SANT/Myb domain
PfamPF002496.9E-11102144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-21103150IPR009057Homeodomain-like
CDDcd001675.68E-8104146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWAPE EDAALKAYVD AHGTGGNWIA LPHKIGTCRA RRRRLEMTVL  60
MSIWLIAHRP ELVVVVYAGL NRCGKSCRLR WLNYLRPNIR HGGFTEDEDR LICSLYIAIG  120
SRWATIAAQL PGRTDNDIKN YWNSKLKRRL LGGGRRPRGA PPRLVLTGPG PAVTAAATSR  180
NAMAASAIER MQLSVRLRRL EAAAPPPPQP FAFYGSNNLA APPWQQPISP AASGSSEMPR  240
RLHHHHPSGA AATSSYSGLI SSWPSSRSHI IHDAWLDASS TPPLSTTSMG DAATTTTTAG  300
GESSSSTPTV STATTPFIGG SIDMDDEIDM LLQQIRCFDE NGDDDADQRL IVGDEAAAGA  360
ENYLRALIDE AAANGGDVGV GSWSSCSTPG VDSVFHEYAQ LDYGQYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-20141507108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610955.10.0transcription factor MYB36
SwissprotQ9FKL23e-70MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0E0IJX30.0A0A0E0IJX3_ORYNI; Uncharacterized protein
STRINGONIVA09G10950.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-63myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]