PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G15020.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 131aa    MW: 13510.3 Da    PI: 11.7295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G15020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-052143123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+ksF++   L  H  +H
  ONIVA09G15020.1 21 FECKTCNKSFPSLQGLGGHRTSH 43
                     89**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.55E-61845No hitNo description
PfamPF139124.0E-122043IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6792148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-42144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAPTSSSTPA GSRALAAEGV FECKTCNKSF PSLQGLGGHR TSHTRLQAKL LSDPAAAAAE  60
RDRARIHECA ACAGSSSPWG RRSAATCAGT GARRARRPSC SRPPTSTTRA APPRTFGPLG  120
QLPLRPCLPA S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1087610.0AC108761.2 Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0ILG41e-84A0A0E0ILG4_ORYNI; Uncharacterized protein
STRINGONIVA09G15020.12e-85(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-10C2H2 family protein