PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G15440.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 645aa    MW: 66961.5 Da    PI: 10.3923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G15440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88e-112777446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                     W t E++ll++av ++G+g+W+++a +++         g+t+ +c++r++ 
  ONIVA09G15440.1 27 WGTLEELLLACAVSRHGTGSWDSVAMEVQtrsplaarPGLTPTSCRLRFRH 77
                     9999********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-52381IPR001005SANT/Myb domain
SuperFamilySSF466898.16E-62582IPR009057Homeodomain-like
CDDcd001678.51E-52759No hitNo description
PfamPF002497.1E-102776IPR001005SANT/Myb domain
PROSITE profilePS500906.4462779IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.3E-52779IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MADGSDGPDV SPAAAAAAGG GGGDEIWGTL EELLLACAVS RHGTGSWDSV AMEVQTRSPL  60
AARPGLTPTS CRLRFRHLHR RFSVGGAVEE DDDDEEAEEG GPDASAADGW MDELRRLRVA  120
ELRREVERCD LSIGTLQTKV KRLREEREQS IHGGGGGEGK PETANGDERL SSEEPGRSCR  180
ESNSTDLKPA ARAGDHSVKA EEEDEDAAAA KQQASGESVA ASKESSDLRS SASLRRRRRH  240
KPGADEDADG EEASALRPPS QSPSSSSSSQ PLAALLDTFA ARFGPLLERL HESQESDAYR  300
GAIRRHVDIE MVRRKLDASP AGGGGGAAAA AEFYRDLLLL CANALVFFPR AGPERGAAAE  360
ARALVYSSLR LREPKQEPGT AAAAAVAAAA GSPPAEDTRR AEGVVSVGGG GAGIVGSLIE  420
KGGKPLIVCR KRSSIAKAAA AAKKEESAEK GEAAEEGEGS DDGKKKVSVS ASASKDKAWG  480
LRTKKGRGPG KNSASVGGRK MAKLSEATEA ATDGSKKPDK KIAADAATPA KKRNAVDFLK  540
RLNQGSSPSK KKKKGSPMGT RKRAAAATSP EQPQKTRKGP GRKDAGRGGS KKGGKSATPK  600
RSVGRPPSKR GAAAATTPPP SKRAKVNRSE KTAATATAAK RGGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1530552KKRNAVDFLKRLNQGSSPSKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612366.10.0uncharacterized protein LOC9269664
TrEMBLA0A0E0ILL10.0A0A0E0ILL1_ORYNI; Uncharacterized protein
STRINGONIVA09G15440.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-12DNA-binding bromodomain-containing protein