PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G17450.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 355aa MW: 38418 Da PI: 6.2927

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G17450.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.5	1.2e-07	167	216	14	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R +A rs +RK +i+eLe+kv++L++e ++L +l l+ + l++e+ ONIVA09G17450.1 167 RQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTEN 216 89***********************************9999888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-9	159	218	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.48E-19	160	208	No hit	No description
PROSITE profile	PS50217	8.967	163	219	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-6	167	212	No hit	No description
SuperFamily	SSF57959	4.1E-7	167	212	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MNREKSPIPG DGGDGLPPQA TRRAGPPAAA AAAEYDISRM PDFPTRNPGH RRAHSEILSL 60 PEDLDLCAAG GGDGPSLSDE NDEELFSMFL DVEKLNSTCG ASSEAEAESS PKHQHSLSMD 120 ESMSIKAEEL VGASPGTEGM SSAEAKKAVS AAKLAELALV DPKRAKRQSA ARSKERKMRY 180 IAELERKVQT LQTEATTLSA QLALLQRDTS GLTTENSELK LRLQTMEQQV HLQDALNDTL 240 KSEVQRLKVA TGQMANGGGM MMNFGGMPHQ FGGNQQMFQN NQAMQSMLAA HQLQQLQLHP 300 QAQQQQVLHP QHQQQQPLHP LQAQQLQQAA RDLKMKSPMG GQSQWGDGKS GSSGN

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MNREKSPIPG DGGDGLPPQA TRRAGPPAAA AAAEYDISRM PDFPTRNPGH RRAHSEILSL  60
PEDLDLCAAG GGDGPSLSDE NDEELFSMFL DVEKLNSTCG ASSEAEAESS PKHQHSLSMD  120
ESMSIKAEEL VGASPGTEGM SSAEAKKAVS AAKLAELALV DPKRAKRQSA ARSKERKMRY  180
IAELERKVQT LQTEATTLSA QLALLQRDTS GLTTENSELK LRLQTMEQQV HLQDALNDTL  240
KSEVQRLKVA TGQMANGGGM MMNFGGMPHQ FGGNQQMFQN NQAMQSMLAA HQLQQLQLHP  300
QAQQQQVLHP QHQQQQPLHP LQAQQLQQAA RDLKMKSPMG GQSQWGDGKS GSSGN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102795	0.0	AK102795.1 Oryza sativa Japonica Group cDNA clone:J033108B13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612692.1	0.0	transcription factor RF2a
Swissprot	Q69IL4	0.0	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A0E0IMD7	0.0	A0A0E0IMD7_ORYNI; Uncharacterized protein
STRING	OPUNC09G14870.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-56	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]