PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G01090.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BBR-BPC

Protein Properties

Length: 234aa MW: 26026.2 Da PI: 10.6534

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G01090.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	295.3	2.4e-90	40	234	107	301
GAGA_bind 107 sidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvl 198 ++++ + +pq ++++ + ++ee+++ + +ee++++++e + +kkrq++++pk+++ kk+kk +++++++ +++sa+ +r++ + k+i++v+ ONIVA10G01090.1 40 MMQHQPE-PQPQPQPPPSPpHPKEECISLPLMEENVPVISEPPPPKKRQQGRQPKVPRPKKPKK-PAAPREDGAPPSAPaPRRRGPMKNIGMVI 131 4443333.44777777777799****************************************.9999****999********** PP GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkH 292 ng++lD s++P+ +CsCtGa++qCY+WG+GGWqSaCCttt+S+yPLP+stkr gaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkH ONIVA10G01090.1 132 NGIDLDLSRIPTSICSCTGAPQQCYRWGAGGWQSACCTTTVSTYPLPMSTKRHGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKH 225 ****************************************************************************************** PP GAGA_bind 293 Gtnkfvtir 301 Gtnkfvtir ONIVA10G01090.1 226 GTNKFVTIR 234 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	6.4E-123	1	234	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.6E-95	14	234	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MPPPPAATEA PPSMPMNFVR NDIWMHPQQQ HHHHPREPKM MQHQPEPQPQ PQPPPSPPHP 60 KEECISLPLM EENVPVISEP PPPKKRQQGR QPKVPRPKKP KKPAAPREDG APPSAPAPRR 120 RGPMKNIGMV INGIDLDLSR IPTSICSCTG APQQCYRWGA GGWQSACCTT TVSTYPLPMS 180 TKRHGARIAG RKMSHGAFKK VLEKLAGEGY NLNNPIDLKT FWAKHGTNKF VTIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC078891	0.0	AC078891.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0092N12, complete sequence.
GenBank	AC145127	0.0	AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	AY570520	0.0	AY570520.1 Oryza sativa (japonica cultivar-group) barley B recombinant like protein C gene, complete cds.
GenBank	AY570521	0.0	AY570521.1 Oryza sativa (japonica cultivar-group) barley B recombinant like protein C mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876706.1	1e-122	barley B recombinant-like protein A isoform X2
Refseq	XP_025876708.1	1e-122	barley B recombinant-like protein B isoform X2
Swissprot	P0DH88	1e-118	BBRA_ORYSJ; Barley B recombinant-like protein A
Swissprot	P0DH89	1e-118	BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBL	A0A0E0IP33	1e-170	A0A0E0IP33_ORYNI; Uncharacterized protein
STRING	ONIVA10G01090.1	1e-170	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2211	36	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-59	basic pentacysteine 2

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]