PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G02490.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 245aa    MW: 27476.7 Da    PI: 10.8622
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G02490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-13981711897
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +p + a+++++++     l+l++++g + ++++  +   ++ ++t+GWkeF++a gL++g++++F++++rs++  +v+++
  ONIVA10G02490.1  98 VPSTLATAYEMQHGD--SLRLKTSHGLKIKIRI--KEAASTLYMTTGWKEFAEATGLETGETILFRMSSRSKA--RVMLL 171
                      688889999888655..6***************..999999*************************9988777..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-1294173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1297174IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.33598174IPR003340B3 DNA binding domain
PfamPF023622.7E-1198172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDESYSLFRK IGNEQRGREM LAFRCVACTA IVSLYKCQGM RPLLPQRDAS TPPQEHQSHI  60
PSQSTVRLSD LRKIITDKQR QVTHKKGPVP RRLFFRPVPS TLATAYEMQH GDSLRLKTSH  120
GLKIKIRIKE AASTLYMTTG WKEFAEATGL ETGETILFRM SSRSKARVML LNRQCLIRCP  180
VKTPSTTSSD KNRSLSPSDQ LTRASTCAHP STSKSIPPLR NGTGSTKRSI ADTSFCHQLK  240
LTAEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0877230.0AC087723.3 Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence.
GenBankAC1166000.0AC116600.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0036D19, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ7XGM61e-104Y1086_ORYSJ; Putative B3 domain-containing protein Os10g0158600
TrEMBLA0A0E0IPL50.0A0A0E0IPL5_ORYNI; Uncharacterized protein
STRINGONIVA10G02490.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3120544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-08B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]