PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G04710.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 820aa MW: 90716.2 Da PI: 5.9598

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G04710.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	386.9	2.2e-118	444	813	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL++cA+ v+++d + a++lL++++++a +gd qRla++f+++L+arla+++s++yk + ++ + +++l+a++l+ ++P+ k+sh ONIVA10G04710.1 444 ETLLIHCAQSVATDDRRSATELLKQIRQHAHANGDGDQRLAHCFANGLEARLAGTGSQIYKNYTITRLP---CTDVLKAYQLYLAACPFKKISH 534 789**********************************************************999999...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 aNq+Il+ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+ L+++A++++vpfef++ +a+r+e ONIVA10G04710.1 535 YFANQTILNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGfrPAERTEETGRYLSDYAQTFNVPFEFQA-IASRFE 627 ***********************************************************************************.7* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++++e+L+++++E+l+Vn++++ ++l+desv es+r+ Lk++++++P+v+++ + ++n++ F++rf eal +ysa+fd+le+++p+++e+ ONIVA10G04710.1 628 AVRMEDLHIEEDEVLIVNCMFKFKNLMDESVVAESPRNMALKTIRKMNPHVFIHGVVNGSYNAPFFVTRFREALFHYSAIFDMLETNIPKDNEQ 721 ****************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r +E +l++re+ nv++ceg er er et+++W+ r +++GFk++pl+++++k a+ +r +++d + ++e++ +l++gWk+r L+++S W+ ONIVA10G04710.1 722 RLLIESALFSREAINVISCEGLERMERPETYKQWQVRNQRVGFKQLPLNQDMMKRAREKVRCYHKD-FIIDEDNRWLLQGWKGRILFALSTWK 813 ************************************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.115	417	794	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.7E-116	444	813	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MVMDAGVHDV CTMLPGSKRD AHLPLPIYPQ IAAANGFATA EEFDPLLFLS PDAVCGGGGG 60 DYLNIVSAQP ISAASTNGAS PPRDVSVSAS AASSAAAQHD DSEAFSDIVL GYINRMLMAE 120 DIDEKFEHYP VNADDLLAAE KPFLEILADQ SPYSGGSSVE SPDGSSAANS CNSLSPCNCS 180 SSSDGLGAVP QTPVLEFPTT AFSQTPQLYG DLIPTGGMVE SGGAWPYDPT EFYQLQTKPV 240 RENLLSQSSS FASSIGSSVT FSEGFESLLS PAGVLPDVSL NDFVVQNQQA LQFRRGFQEA 300 SKFLPDESKL VIDVDKLYSG DEGSRFLGEV RQEKKLVKVK TETSDVESAG HRGKKHFYGD 360 DLDAEEGRCS KHSAQGIDTD HLVRDLMDKV LLCNGETCSK GVKELREALQ HDVAKHSGGG 420 HGKGSSHGKG RGKKQPKKEV VDLETLLIHC AQSVATDDRR SATELLKQIR QHAHANGDGD 480 QRLAHCFANG LEARLAGTGS QIYKNYTITR LPCTDVLKAY QLYLAACPFK KISHYFANQT 540 ILNAVEKAKK VHIVDYGIYY GFQWPCLIQR LSNRPGGPPK LRITGIDTPQ PGFRPAERTE 600 ETGRYLSDYA QTFNVPFEFQ AIASRFEAVR MEDLHIEEDE VLIVNCMFKF KNLMDESVVA 660 ESPRNMALKT IRKMNPHVFI HGVVNGSYNA PFFVTRFREA LFHYSAIFDM LETNIPKDNE 720 QRLLIESALF SREAINVISC EGLERMERPE TYKQWQVRNQ RVGFKQLPLN QDMMKRAREK 780 VRCYHKDFII DEDNRWLLQG WKGRILFALS TWKPDNRSSS

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MVMDAGVHDV CTMLPGSKRD AHLPLPIYPQ IAAANGFATA EEFDPLLFLS PDAVCGGGGG  60
DYLNIVSAQP ISAASTNGAS PPRDVSVSAS AASSAAAQHD DSEAFSDIVL GYINRMLMAE  120
DIDEKFEHYP VNADDLLAAE KPFLEILADQ SPYSGGSSVE SPDGSSAANS CNSLSPCNCS  180
SSSDGLGAVP QTPVLEFPTT AFSQTPQLYG DLIPTGGMVE SGGAWPYDPT EFYQLQTKPV  240
RENLLSQSSS FASSIGSSVT FSEGFESLLS PAGVLPDVSL NDFVVQNQQA LQFRRGFQEA  300
SKFLPDESKL VIDVDKLYSG DEGSRFLGEV RQEKKLVKVK TETSDVESAG HRGKKHFYGD  360
DLDAEEGRCS KHSAQGIDTD HLVRDLMDKV LLCNGETCSK GVKELREALQ HDVAKHSGGG  420
HGKGSSHGKG RGKKQPKKEV VDLETLLIHC AQSVATDDRR SATELLKQIR QHAHANGDGD  480
QRLAHCFANG LEARLAGTGS QIYKNYTITR LPCTDVLKAY QLYLAACPFK KISHYFANQT  540
ILNAVEKAKK VHIVDYGIYY GFQWPCLIQR LSNRPGGPPK LRITGIDTPQ PGFRPAERTE  600
ETGRYLSDYA QTFNVPFEFQ AIASRFEAVR MEDLHIEEDE VLIVNCMFKF KNLMDESVVA  660
ESPRNMALKT IRKMNPHVFI HGVVNGSYNA PFFVTRFREA LFHYSAIFDM LETNIPKDNE  720
QRLLIESALF SREAINVISC EGLERMERPE TYKQWQVRNQ RVGFKQLPLN QDMMKRAREK  780
VRCYHKDFII DEDNRWLLQG WKGRILFALS TWKPDNRSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-51	447	813	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619294.1	0.0	scarecrow-like protein 9 isoform X1
TrEMBL	A0A0E0IQD8	0.0	A0A0E0IQD8_ORYNI; Uncharacterized protein
STRING	ONIVA10G04710.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-176	GRAS family protein