PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G05120.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 317aa MW: 35777.8 Da PI: 10.5863

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G05120.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.6	1.6e-11	96	167	18	95
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 lp + +++++g +k ltl +++++ +v+l +k++++++++kGWk+Fv+ +L++g v F++++ s+ l + ONIVA10G05120.1 96 LPPEIVARCNGH--DGKHLTLVTRNSKPVNVRL--EKRGQSFYISKGWKKFVELTDLRVGQCVRFSVSSPST--LDLL 167 677777777655..4568*************..*****************************654333..4444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.96E-14	92	172	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.6E-13	95	172	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.263	96	172	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-8	96	163	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.2E-6	242	313	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.47E-10	242	314	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	7.161	281	317	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEGSLSGGAD QRWARRCERG WSSSSSRRHP PRPSKPQANK EKKGAIQRVV QAQCSLSTSL 60 RLTAHVTSSI VHEQSSNIRY GENRKHGQRY AYHEPLPPEI VARCNGHDGK HLTLVTRNSK 120 PVNVRLEKRG QSFYISKGWK KFVELTDLRV GQCVRFSVSS PSTLDLLILD KHGTSLAIPP 180 SKRDLKLKSK RSTHQDSKGH PSNTDPGPSR IINRRVTKSA NNKPKFADLC FCAENYFSKR 240 YPIDHLEQLM TGRTEDIEVQ TLVGPSVNMV LHTSTDHRCN LKKGWTDFAL SNGIKLNTVC 300 IFHFYKTTHL GVIVDIF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833232	0.0	CT833232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA237C07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q7XFU9	0.0	Y1030_ORYSJ; B3 domain-containing protein Os10g0323000
TrEMBL	A0A0E0IQI6	0.0	A0A0E0IQI6_ORYNI; Uncharacterized protein
STRING	ONIVA10G05120.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18310	3	3

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]