PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G06410.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 670aa    MW: 75321.2 Da    PI: 11.7781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G06410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07334377348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  ONIVA10G06410.1 334 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 377
                      79****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001643.3E-29164243IPR006032Ribosomal protein S12/S23
Gene3DG3DSA:2.40.50.1409.1E-17175242IPR012340Nucleic acid-binding, OB-fold
SuperFamilySSF502491.37E-16175243IPR012340Nucleic acid-binding, OB-fold
PROSITE profilePS512948.003327381IPR017930Myb domain
SuperFamilySSF466898.22E-8330379IPR009057Homeodomain-like
SMARTSM007178.4E-4331379IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-8333376IPR009057Homeodomain-like
CDDcd001670.00105334376No hitNo description
PROSITE profilePS512949.407467515IPR017930Myb domain
SMARTSM007176.1471513IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-11476523IPR009057Homeodomain-like
PfamPF139212.0E-5478523No hitNo description
CDDcd001673.84E-4479511No hitNo description
SuperFamilySSF466897.76E-15491563IPR009057Homeodomain-like
PROSITE profilePS500906.458512562IPR017877Myb-like domain
SMARTSM007170.57516564IPR001005SANT/Myb domain
CDDcd001670.00491519561No hitNo description
Gene3DG3DSA:1.10.10.601.0E-6524561IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MGWNVPFATL CALSFRMSVR ALAMRPVFPR SLNSHRERIR PRACAADRWW DTCGLRGRRG  60
CQIGVGERES RGNKREVGER RRAPDHQAGA GLAPPVAVAD GSTRVGRQRG GGIYRREGGQ  120
IRAGAPTAGR RPRRHRRWRA LWRCGCLPRT QIQAAWRKKC GMGAGRKLKT HRRNQRWADK  180
AYKKSHLGNE WKKPFAGSSH AKGIVLEKIG IEAKQPNSAI CKCARVQLVK NGKKIAAFVP  240
NDALSSSRLR GRDGSGGDHG DATAAAAASR EVHRPPQAAA GMDAGGGRAA AAPRQGERLP  300
PLEPGRQEHA TPLRKVVPRQ VAPPPRPRDV YHRPFTARDD DELLRLHYRL GDRWKEIGRA  360
VYGRTSRVMK HRWRELRRGG FLAAAARKEQ AALDMADDTV ETSEVEEPAD QSLPSLELQR  420
STLADTLASS FGSCSLATDH VMDPLAGSLA LGKYQFFTII NIKDVFAGTL VRHPWLPSLV  480
KENGFRRWSR VTRSMPRRSA RLCRDRWCHH LARDVYHRPF TARDDDELLR LHYRLGDRWK  540
KIGHAVYGRT SCVMNHRWRE LRRSGFLAAA ARTEQTLDMA DDTVESEMEE SDQSLPTTRK  600
SIIASGRKGS LQAGRPSACK PTTVKIADLR RRRGRPPAKI IFAGGRWLVR SACENRNRPP  660
TKKKNFRLRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_SL2e-4716124368840S ribosomal protein S23
4v7e_BX2e-4716124368840S ribosomal protein S12
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0IQY60.0A0A0E0IQY6_ORYNI; Uncharacterized protein
STRINGONIVA10G06410.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.14e-19myb domain protein 70