PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G06410.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 680aa    MW: 76455.5 Da    PI: 11.7284
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G06410.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07344387348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  ONIVA10G06410.2 344 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 387
                      79****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001641.4E-34164254IPR006032Ribosomal protein S12/S23
SuperFamilySSF502494.11E-18175251IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.50.1407.8E-19175253IPR012340Nucleic acid-binding, OB-fold
PROSITE profilePS512948.003337391IPR017930Myb domain
SuperFamilySSF466898.22E-8340389IPR009057Homeodomain-like
SMARTSM007178.4E-4341389IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-8343386IPR009057Homeodomain-like
CDDcd001670.00106344386No hitNo description
PROSITE profilePS512949.407477525IPR017930Myb domain
SMARTSM007176.1481523IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-11486533IPR009057Homeodomain-like
PfamPF139212.0E-5488533No hitNo description
CDDcd001673.87E-4489521No hitNo description
SuperFamilySSF466898.58E-15501573IPR009057Homeodomain-like
PROSITE profilePS500906.458522572IPR017877Myb-like domain
SMARTSM007170.57526574IPR001005SANT/Myb domain
CDDcd001670.00499529571No hitNo description
Gene3DG3DSA:1.10.10.601.0E-6534571IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MGWNVPFATL CALSFRMSVR ALAMRPVFPR SLNSHRERIR PRACAADRWW DTCGLRGRRG  60
CQIGVGERES RGNKREVGER RRAPDHQAGA GLAPPVAVAD GSTRVGRQRG GGIYRREGGQ  120
IRAGAPTAGR RPRRHRRWRA LWRCGCLPRT QIQAAWRKKC GMGAGRKLKT HRRNQRWADK  180
AYKKSHLGNE WKKPFAGSSH AKGIVLEKIG IEAKQPNSAI CKCARVQLVK NGKKIAAFVP  240
NDGCLNFIKE NVSLSSSRLR GRDGSGGDHG DATAAAAASR EVHRPPQAAA GMDAGGGRAA  300
AAPRQGERLP PLEPGRQEHA TPLRKVVPRQ VAPPPRPRDV YHRPFTARDD DELLRLHYRL  360
GDRWKEIGRA VYGRTSRVMK HRWRELRRGG FLAAAARKEQ AALDMADDTV ETSEVEEPAD  420
QSLPSLELQR STLADTLASS FGSCSLATDH VMDPLAGSLA LGKYQFFTII NIKDVFAGTL  480
VRHPWLPSLV KENGFRRWSR VTRSMPRRSA RLCRDRWCHH LARDVYHRPF TARDDDELLR  540
LHYRLGDRWK KIGHAVYGRT SCVMNHRWRE LRRSGFLAAA ARTEQTLDMA DDTVESEMEE  600
SDQSLPTTRK SIIASGRKGS LQAGRPSACK PTTVKIADLR RRRGRPPAKI IFAGGRWLVR  660
SACENRNRPP TKKKNFRLRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_SL2e-5416125169640S ribosomal protein S23
4v7e_BX2e-5416125169640S ribosomal protein S12
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0IQY70.0A0A0E0IQY7_ORYNI; Uncharacterized protein
STRINGONIVA10G06410.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3110644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.15e-19myb domain protein 70