PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G07150.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 390aa    MW: 43639.9 Da    PI: 6.0756
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G07150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS193.41.4e-59216379201365
             GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                      +++Vn+++qlh+++desvs+e++rd++L++vkslsP++v++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++ r++ E+++++r+i
  ONIVA10G07150.1 216 VIVVNFAYQLHHTPDESVSTENHRDRILRMVKSLSPRLVTLVEQESNTNTRPFFPRYLETLDYYTAMFESIDVALPRDDKRRMSAEQHCVARDI 309
                      789******************************************************************************************* PP

             GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                      vn++acegaer+erhe ++kW++rl++aGF+p+pls+ +++++k+ll++++s  yr+ee++g l+lgWk+r
  ONIVA10G07150.1 310 VNLIACEGAERVERHEVFGKWKARLTMAGFRPYPLSSVVNSTIKTLLHTYNSF-YRLEERDGVLYLGWKNR 379
                      ***************************************************65.***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.6181369IPR005202Transcription factor GRAS
PfamPF035144.9E-57216379IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDGRINSLLS TIPQDFTSMS ARASNHAYIC SDDSQMPYYN NSVPSGGNGR FYITQNHQDA  60
HYASSDDGSQ KIGSSPQAFE APYCTLESSS ANGAHPAHSS ASSHSISPIS GSPLSHHDSH  120
SDHTYNSPPS ASCVTEITDL QIKLRELENA ILGPELDIAY DSPESALQPN IMATPENWRQ  180
LLGINTGDLK QVIIACGKAV AENDVRLTEL LISELVIVVN FAYQLHHTPD ESVSTENHRD  240
RILRMVKSLS PRLVTLVEQE SNTNTRPFFP RYLETLDYYT AMFESIDVAL PRDDKRRMSA  300
EQHCVARDIV NLIACEGAER VERHEVFGKW KARLTMAGFR PYPLSSVVNS TIKTLLHTYN  360
SFYRLEERDG VLYLGWKNRL RKCEICNMIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-23217379203366GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133350.0AC113335.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614551.11e-123scarecrow-like protein 21
RefseqXP_015614552.11e-123scarecrow-like protein 21
TrEMBLA0A0E0IR850.0A0A0E0IR85_ORYNI; Uncharacterized protein
STRINGOGLUM10G07400.41e-136(Oryza glumipatula)
STRINGORUFI10G08100.41e-136(Oryza rufipogon)
STRINGONIVA10G07150.31e-136(Oryza nivara)
STRINGOBART10G07700.21e-136(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.12e-87SCARECROW-like 21