PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G09250.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 446aa    MW: 46869 Da    PI: 6.6501
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G09250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.87e-26191541127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      lp Gf F Ptd+el+   L++k  g++  +++++ +++++i++++P +L  k +k eek  +yfFskr+  ++++kr+ r+++ g W+++g   
  ONIVA10G09250.1  19 LPIGFYFAPTDQELL-AILEAKRLGRPlSRAHDAfFHDIRILDFHPAELYeKYAKDEEKgYIYFFSKREFPTSSKKRPLRVAEGGAWNSSGAVY 111
                      699************.7799999999954445556**************8345555555455******************************99 PP

              NAM  91 evlsk....kgelvglkktLvfykg..rapkgektdWvmheyr 127
                      +v+++    +g +vg kktLvf++    +++++kt+W ++e++
  ONIVA10G09250.1 112 KVVKSsksgGGYDVGHKKTLVFHQRfpGDKEAVKTNWAIQEFT 154
                      9999766666666**********7544667789********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3212173IPR003441NAC domain
PROSITE profilePS5100531.15519174IPR003441NAC domain
PfamPF023654.8E-1320154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAAPEDGEDK NFGKNKHGLP IGFYFAPTDQ ELLAILEAKR LGRPLSRAHD AFFHDIRILD  60
FHPAELYEKY AKDEEKGYIY FFSKREFPTS SKKRPLRVAE GGAWNSSGAV YKVVKSSKSG  120
GGYDVGHKKT LVFHQRFPGD KEAVKTNWAI QEFTRIIGPQ NEVPDLAVYR LYKMRKEGRE  180
TPADLAADEA AAAAAMNNRG QQASAAAMAL PPPATGLPGV RRMSMADKAN MASTSKAYAT  240
SQSSSSQLQQ DAAAAAAPPN AAGASNWAPR PCNCRECAPA AGQYGYFASM VPRPSLDRKG  300
KGKAPMDCAE QAAGGGGCHA ESTSTPAPPK GAEYDGCSVA VEDDDEELLK FLQAMVRGKE  360
VEGDGDHAMA DERGPQQGSS PVAAVAASGS APAGHDGRRG SLQGGHHGSS SPTSLAAAAA  420
TGDDVTAAAS AGDDVSGSQQ EDHPAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2421580.0AK242158.1 Oryza sativa Japonica Group cDNA, clone: J075155G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614025.11e-168spidroin-2
TrEMBLA0A0E0IS210.0A0A0E0IS21_ORYNI; Uncharacterized protein
STRINGONIVA10G09250.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-12NAC family protein