PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G10210.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 371aa    MW: 39554.1 Da    PI: 5.5681
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G10210.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.5e-083133462154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  ONIVA10G10210.3 313 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 346
                      569*****************************87 PP
2ELK26.51.4e-09267288122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++L+++++E++
  ONIVA10G10210.3 267 ELKHELKQGYKEKLIDIREEIL 288
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.3E-20103147IPR005540KNOX1
PfamPF037906.9E-18105146IPR005540KNOX1
SMARTSM012565.5E-27156212IPR005541KNOX2
PfamPF037911.4E-18164211IPR005541KNOX2
SMARTSM011880.004267288IPR005539ELK domain
PROSITE profilePS5121310.039267287IPR005539ELK domain
PROSITE profilePS5007111.742287350IPR001356Homeobox domain
SMARTSM003894.8E-11289354IPR001356Homeobox domain
SuperFamilySSF466894.15E-16289354IPR009057Homeodomain-like
CDDcd000861.17E-11290351No hitNo description
Gene3DG3DSA:1.10.10.605.7E-25294351IPR009057Homeodomain-like
PfamPF059201.1E-17307346IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAFHGHLPHE MTMQALGADD AAVAAAAAAG GVGAGGAPAW MRYNDGSFLH LQTTSDSSAS  60
PSGAAAAAAA AAAAGVQQWM GGGGGGEDAV AAAMGGGGEA DAARCKAEIL AHPLYEQLLS  120
AHVACLRIAT PVDQLPRIDA QLAQSQGVVA KYSALAAAAA GDDGRELDQF MTHYVLLLCS  180
FKEQLQQHVR VHAMEAVMAC WELEQNLQSL TGASPGEGTG ATMSDGEDDQ ADSEANMYDP  240
SLDGADNMGF GLPTESERSL MERVRQELKH ELKQGYKEKL IDIREEILRK RRAGKLPGDT  300
TSTLKAWWQS HAKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHS NPSSSTSVKT  360
KRKSNAGDNN S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12290354872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345860.0CT834586.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650701.20.0LOW QUALITY PROTEIN: homeobox protein knotted-1-like 13
SwissprotQ0J6N40.0KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0E0ISF40.0A0A0E0ISF4_ORYNI; Uncharacterized protein
STRINGONIVA10G10210.30.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-157KNOTTED1-like homeobox gene 3