PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G16300.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 214aa MW: 21281.6 Da PI: 9.2702

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G16300.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	104.8	4.9e-33	53	109	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++cprC s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr+++k++ ONIVA10G16300.1 53 PRQCPRCGSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNSKRA 109 679***********************************************9998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	26.468	54	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-30	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-17	61	99	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MVFDDDLGVQ GQGYAAAANG GIGGGGVEAV NAAAAPRQGG RHAGHPPLPR PPPRQCPRCG 60 SANTKFCYYN NYSRTQPRYL CKACRRHWTE GGTLRDVPVG GGRKNSKRAA GGGKAGATAS 120 TAASAHVVAP AAAPPTSSSF PDLLRQMLMA PATAGGGGGY SIDLTAWQQM AAFAAPPQAA 180 TGDVGGAVGA ASTAAPDANC GGGGVQYWNG TNGD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC092489	0.0	AC092489.4 Oryza sativa chromosome 10 BAC OSJNBa0066I08 genomic sequence, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614315.1	1e-139	dof zinc finger protein 1-like
TrEMBL	A0A0E0IUN4	1e-150	A0A0E0IUN4_ORYNI; Uncharacterized protein
STRING	ONIVA10G16300.1	1e-151	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	4e-18	Dof family protein