PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G17310.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 861aa MW: 90087.8 Da PI: 5.9488

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G17310.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	99.2	3.6e-31	172	256	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r ++ +t+++f+qlea ONIVA10G17310.1 172 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 256 8******************************************************************97..56668*****85 PP
2	trihelix	111.1	6.8e-35	549	634	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a ONIVA10G17310.1 549 RWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 634 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.01	169	231	IPR001005	SANT/Myb domain
Pfam	PF13837	3.0E-21	171	257	No hit	No description
PROSITE profile	PS50090	6.737	171	229	IPR017877	Myb-like domain
CDD	cd12203	4.89E-28	171	236	No hit	No description
SMART	SM00717	0.0087	546	608	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-4	548	605	IPR009057	Homeodomain-like
Pfam	PF13837	9.4E-24	548	635	No hit	No description
PROSITE profile	PS50090	7.317	548	606	IPR017877	Myb-like domain
CDD	cd12203	1.37E-28	549	613	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence Send to blast
MAIYYLEREG LTHNMPMHGH FYTPLPLNHW HADTTNAADM TRGPMRMWDP HVSGVLMRVE 60 MVSGNTRGGG GGGGGSSMQQ QQPGGGGGGV QQFGAVAPEM SPFSPAGGGG GGRISMAEAA 120 SPISSRPPPA QQQFDELGVG GGGGGGGGFD AEALAAAAVG EEGASGGAVG NRWPRQETLA 180 LLKIRSDMDA AFRDATLKGP LWEEVSRKLA EEGYRRSAKK CKEKFENVHK YYKRTKESRA 240 GRNDGKTYRF FTQLEALHGT AAGVVAAPSP VTSLAPPPAT AVGVSGGVRA PAEPPPAVVM 300 GNVMSFSTSN TEEYSDEEDS DDEGTEDMGG GGGDERGKRK RLSEGGAAAG GGGGGGGGGG 360 SGKMMRFFEG LVKQVMERQE AMQQRFLEAI EKREQDRMIR EEAWRRQEMA RLAREQEILA 420 QERAMAASRD AAVVSFIQKI TGQTIPMPPI IAAPAITVMP PPAPSQPPQP PPPPSHPTPI 480 TSVAPAPPPP PPPAAAAAAS QPSPQATKSP LPATPQTQSS MDIVMTAAEA HDAGYDGSGG 540 GGGQPSSSRW PKAEVHALIQ LRSNLDNRYQ EAGPKGPLWE EISAGMRRLG YSRSSKRCKE 600 KWENINKYFK KVKESNKKRP EDSKTCPYFH QLDALYRNKA ALNSSSSAAA AAAPALPPPE 660 HAEPAVTVAA PISQTPPPPP PQPVTTTKNG NGTSSTNGAN GEGGGGGSGG MQMQASNGSV 720 VAGNKFFTGA AAKKPEDIMK EMMEQRPQQP AAANNAFNRT DGGGGGGGVD SDNMDEDDED 780 DYDDDDDDDD DDVDGNKMQY EIQFQHQHHH QQPPQHRHQQ SVVRPNAAAS AAAGGNPPGT 840 AAPATAAAAT TTTGSFLAMV Q

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence Send to blast

MAIYYLEREG LTHNMPMHGH FYTPLPLNHW HADTTNAADM TRGPMRMWDP HVSGVLMRVE  60
MVSGNTRGGG GGGGGSSMQQ QQPGGGGGGV QQFGAVAPEM SPFSPAGGGG GGRISMAEAA  120
SPISSRPPPA QQQFDELGVG GGGGGGGGFD AEALAAAAVG EEGASGGAVG NRWPRQETLA  180
LLKIRSDMDA AFRDATLKGP LWEEVSRKLA EEGYRRSAKK CKEKFENVHK YYKRTKESRA  240
GRNDGKTYRF FTQLEALHGT AAGVVAAPSP VTSLAPPPAT AVGVSGGVRA PAEPPPAVVM  300
GNVMSFSTSN TEEYSDEEDS DDEGTEDMGG GGGDERGKRK RLSEGGAAAG GGGGGGGGGG  360
SGKMMRFFEG LVKQVMERQE AMQQRFLEAI EKREQDRMIR EEAWRRQEMA RLAREQEILA  420
QERAMAASRD AAVVSFIQKI TGQTIPMPPI IAAPAITVMP PPAPSQPPQP PPPPSHPTPI  480
TSVAPAPPPP PPPAAAAAAS QPSPQATKSP LPATPQTQSS MDIVMTAAEA HDAGYDGSGG  540
GGGQPSSSRW PKAEVHALIQ LRSNLDNRYQ EAGPKGPLWE EISAGMRRLG YSRSSKRCKE  600
KWENINKYFK KVKESNKKRP EDSKTCPYFH QLDALYRNKA ALNSSSSAAA AAAPALPPPE  660
HAEPAVTVAA PISQTPPPPP PQPVTTTKNG NGTSSTNGAN GEGGGGGSGG MQMQASNGSV  720
VAGNKFFTGA AAKKPEDIMK EMMEQRPQQP AAANNAFNRT DGGGGGGGVD SDNMDEDDED  780
DYDDDDDDDD DDVDGNKMQY EIQFQHQHHH QQPPQHRHQQ SVVRPNAAAS AAAGGNPPGT  840
AAPATAAAAT TTTGSFLAMV Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	75	SGNTRGGGGGGGGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC025296	0.0	AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794483.1	0.0	trihelix transcription factor GTL1-like isoform X1
Refseq	XP_025794484.1	0.0	trihelix transcription factor GTL1-like isoform X1
TrEMBL	A0A0E0IV24	0.0	A0A0E0IV24_ORYNI; Uncharacterized protein
STRING	ONIVA10G17310.2	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-49	Trihelix family protein