PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G17310.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 875aa MW: 91535.5 Da PI: 5.8504

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G17310.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	99.1	3.6e-31	186	270	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r ++ +t+++f+qlea ONIVA10G17310.2 186 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 270 8******************************************************************97..56668*****85 PP
2	trihelix	111	7e-35	563	648	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a ONIVA10G17310.2 563 RWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 648 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.01	183	245	IPR001005	SANT/Myb domain
Pfam	PF13837	3.1E-21	185	271	No hit	No description
PROSITE profile	PS50090	6.737	185	243	IPR017877	Myb-like domain
CDD	cd12203	2.32E-28	185	250	No hit	No description
SMART	SM00717	0.0087	560	622	IPR001005	SANT/Myb domain
Pfam	PF13837	9.6E-24	562	649	No hit	No description
PROSITE profile	PS50090	7.317	562	620	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.8E-4	562	619	IPR009057	Homeodomain-like
CDD	cd12203	6.49E-29	563	627	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MAIYYLEREG LTHNMPMHGH FYTPLPLNHW HADTTNAADM TRGPMRMWDP HVSGVLMRVE 60 MVSSPDVLII PSPPFPSGNT RGGGGGGGGS SMQQQQPGGG GGGVQQFGAV APEMSPFSPA 120 GGGGGGRISM AEAASPISSR PPPAQQQFDE LGVGGGGGGG GGFDAEALAA AAVGEEGASG 180 GAVGNRWPRQ ETLALLKIRS DMDAAFRDAT LKGPLWEEVS RKLAEEGYRR SAKKCKEKFE 240 NVHKYYKRTK ESRAGRNDGK TYRFFTQLEA LHGTAAGVVA APSPVTSLAP PPATAVGVSG 300 GVRAPAEPPP AVVMGNVMSF STSNTEEYSD EEDSDDEGTE DMGGGGGDER GKRKRLSEGG 360 AAAGGGGGGG GGGGSGKMMR FFEGLVKQVM ERQEAMQQRF LEAIEKREQD RMIREEAWRR 420 QEMARLAREQ EILAQERAMA ASRDAAVVSF IQKITGQTIP MPPIIAAPAI TVMPPPAPSQ 480 PPQPPPPPSH PTPITSVAPA PPPPPPPAAA AAASQPSPQA TKSPLPATPQ TQSSMDIVMT 540 AAEAHDAGYD GSGGGGGQPS SSRWPKAEVH ALIQLRSNLD NRYQEAGPKG PLWEEISAGM 600 RRLGYSRSSK RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLDALY RNKAALNSSS 660 SAAAAAAPAL PPPEHAEPAV TVAAPISQTP PPPPPQPVTT TKNGNGTSST NGANGEGGGG 720 GSGGMQMQAS NGSVVAGNKF FTGAAAKKPE DIMKEMMEQR PQQPAAANNA FNRTDGGGGG 780 GGVDSDNMDE DDEDDYDDDD DDDDDDVDGN KMQYEIQFQH QHHHQQPPQH RHQQSVVRPN 840 AAASAAAGGN PPGTAAPATA AAATTTTGSF LAMVQ

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MAIYYLEREG LTHNMPMHGH FYTPLPLNHW HADTTNAADM TRGPMRMWDP HVSGVLMRVE  60
MVSSPDVLII PSPPFPSGNT RGGGGGGGGS SMQQQQPGGG GGGVQQFGAV APEMSPFSPA  120
GGGGGGRISM AEAASPISSR PPPAQQQFDE LGVGGGGGGG GGFDAEALAA AAVGEEGASG  180
GAVGNRWPRQ ETLALLKIRS DMDAAFRDAT LKGPLWEEVS RKLAEEGYRR SAKKCKEKFE  240
NVHKYYKRTK ESRAGRNDGK TYRFFTQLEA LHGTAAGVVA APSPVTSLAP PPATAVGVSG  300
GVRAPAEPPP AVVMGNVMSF STSNTEEYSD EEDSDDEGTE DMGGGGGDER GKRKRLSEGG  360
AAAGGGGGGG GGGGSGKMMR FFEGLVKQVM ERQEAMQQRF LEAIEKREQD RMIREEAWRR  420
QEMARLAREQ EILAQERAMA ASRDAAVVSF IQKITGQTIP MPPIIAAPAI TVMPPPAPSQ  480
PPQPPPPPSH PTPITSVAPA PPPPPPPAAA AAASQPSPQA TKSPLPATPQ TQSSMDIVMT  540
AAEAHDAGYD GSGGGGGQPS SSRWPKAEVH ALIQLRSNLD NRYQEAGPKG PLWEEISAGM  600
RRLGYSRSSK RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLDALY RNKAALNSSS  660
SAAAAAAPAL PPPEHAEPAV TVAAPISQTP PPPPPQPVTT TKNGNGTSST NGANGEGGGG  720
GSGGMQMQAS NGSVVAGNKF FTGAAAKKPE DIMKEMMEQR PQQPAAANNA FNRTDGGGGG  780
GGVDSDNMDE DDEDDYDDDD DDDDDDVDGN KMQYEIQFQH QHHHQQPPQH RHQQSVVRPN  840
AAASAAAGGN PPGTAAPATA AAATTTTGSF LAMVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	89	SGNTRGGGGGGGGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC025296	0.0	AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794483.1	0.0	trihelix transcription factor GTL1-like isoform X1
Refseq	XP_025794484.1	0.0	trihelix transcription factor GTL1-like isoform X1
TrEMBL	A0A0E0IV25	0.0	A0A0E0IV25_ORYNI; Uncharacterized protein
STRING	ONIVA10G17310.2	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	3e-49	Trihelix family protein