PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G17960.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 360aa    MW: 38092 Da    PI: 10.2345
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G17960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox171e-05303331432
                      -SS--HHHHHHHHHHHHHSSS--HHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeeree 32 
                        ++t++q+e+Le++++++++ps ++r++
  ONIVA10G17960.1 303 YVQYTPDQVEALERVYAECPKPSFSRRQQ 331
                      6789*********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-5282331IPR009057Homeodomain-like
CDDcd000860.00124306331No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSVKEPTDGH AVDPEKSSES SVGVCSKELS ANPSPTRNIS LPNPPPGQSA IPIHQANPCG  60
LLPAGGKDGA GVYKDDGARG RHASCADLLY RDGLLDLEAA PARAAAGAPL LLLHPLVVTA  120
AVAAGGGQIR RPTPADPPSS PLPSLVAAVA RVPTLAAEPA ARLPPMPFPH GGVGPAACAG  180
LPYVFPRRRV ASPSSPPQLP NRSPLNSRPL LSTRNTMTVA AEVDASPDGE ERRRQACNLT  240
TIYRFLPSFS FFFLSFFRGE GGNFGGGGGR RGGWRQRWRC PMRSGSGSDG GGYDKAGMDS  300
GKYVQYTPDQ VEALERVYAE CPKPSFSRRQ QSPTSSPSRR SRSGSQNRSL QMFDKKRMKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418320.0AK241832.1 Oryza sativa Japonica Group cDNA, clone: J065213C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0IV960.0A0A0E0IV96_ORYNI; Uncharacterized protein
STRINGONIVA10G17960.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2029646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.17e-10HD-ZIP family protein