PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G18590.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 602aa    MW: 64678.4 Da    PI: 7.2148
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G18590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-083653962354
                      SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ryps  ++  LA+++gL+ +qV +WF N R +
  ONIVA10G18590.1 365 RYPSDVDKHILARQTGLSRSQVANWFINARVR 396
                      8*****************************88 PP
2BELL93.71.7e-30207277272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +elq+ k kL ++leeVd+rY++y+eq++++++sFeavag  +a+ Yt+lA+++iSrhFr+L+d ++ q+
  ONIVA10G18590.1 207 AAELQRLKGKLYTMLEEVDRRYRRYCEQMRALAASFEAVAGERAAAAYTRLASRTISRHFRSLRDGVVAQL 277
                      5799****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-44140275IPR006563POX domain
PfamPF075261.8E-42146273IPR006563POX domain
SMARTSM003894.0E-6325404IPR001356Homeobox domain
CDDcd000867.02E-9325401No hitNo description
Gene3DG3DSA:1.10.10.602.2E-22328406IPR009057Homeodomain-like
SuperFamilySSF466898.98E-12364407IPR009057Homeodomain-like
PROSITE profilePS5007110.625365400IPR001356Homeobox domain
PfamPF059209.7E-12366396IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAHDPSLGYA DYFAAEVDGA GATELYGLQQ HQQGVGVAEM FGVRGLMPAA HAHEQSKGVG  60
ALVVGGGGVD DGGATTLPTV HFGGLGELHH HQHRQSQAPL SLSLHRPEAA ATSLLMQQQQ  120
QHLHHQPSPP AGAASTWQLQ QGAWHLRGSR FLLPTQQLLQ EFCSLPVKST TSPSSASKAT  180
KPPQEEAASG GGSSSWTAPT QIQSMDAAEL QRLKGKLYTM LEEVDRRYRR YCEQMRALAA  240
SFEAVAGERA AAAYTRLASR TISRHFRSLR DGVVAQLQAV RKQLGEKDTA VPGMTKGETP  300
RLRVLDQCLR QHKAYQAGML ESHPWRPQRG LPERAVSILR AWLFEHFLHP RMFAGFVTML  360
KLSPRYPSDV DKHILARQTG LSRSQVANWF INARVRLWKP MVEEMYAEEM KDEEGSGQST  420
QASNPQNPNP SSYTSEVRGG GGGGVEDRGE QKPSRAQLLH DAGSLASVVS IGHGGAGRTM  480
VDHHHHQSLN FGMMDQLDFD AYEAAGGGQG FGAGGGVSLT LGLQQQHADP HDGVNVAFAA  540
AAAPPNSSGV AAEYLFMGGG EHQQQLPQTA QFGAVMEGDA ASHYRGLSAT AAGFHLLHDL  600
AG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680290.0AK068029.1 Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614125.10.0BEL1-like homeodomain protein 4
TrEMBLA0A0E0IVH50.0A0A0E0IVH5_ORYNI; Uncharacterized protein
STRINGONIVA10G18590.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.27e-70BEL1-like homeodomain 2