PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G18740.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 312aa    MW: 33121.3 Da    PI: 10.0319
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G18740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.91.1e-2935152199
                      EEEE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                      f+kv tpsdv+k++rlv+pk++ae++                   g    ++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L 
  ONIVA10G18740.1  35 FEKVVTPSDVGKLNRLVIPKQHAERYfpldaaagaggggggggggG--GGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLG 126
                      99******************************99999999998543..347789**************************************** PP

                      TT-EEEEEE-.SS.SEE..EEEEE-S CS
               B3  76 egDfvvFkld.gr.sefelvvkvfrk 99 
                      +gD+v F +  g+  +++l++ ++r+
  ONIVA10G18740.1 127 AGDTVSFGRGlGDaARGRLFIDFRRR 152
                      ********666888999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-3828154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-2832136IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-2433133No hitNo description
PfamPF023628.3E-2735152IPR003340B3 DNA binding domain
SMARTSM010191.4E-2135153IPR003340B3 DNA binding domain
PROSITE profilePS5086313.33835153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEFTPISPPT RVAGGEEDSE RGAAAWAVVE KEHMFEKVVT PSDVGKLNRL VIPKQHAERY  60
FPLDAAAGAG GGGGGGGGGG GGKGLVLSFE DRTGKAWRFR YSYWNSSQSY VMTKGWSRFV  120
KEKRLGAGDT VSFGRGLGDA ARGRLFIDFR RRRQDAGSFM FPPTAAPPSH SHHHHQRHHP  180
PLPSVPLCPW RDYTTAYGGG YGYGYGGGST PASSRHVLFL RPQVPAAVVL KSVPVHVAAA  240
SAVQEAATTT RPKRVRLFGV NLDCPAAMDD DDDIAGAASR TAALSLLQLP SPSSSTSSST  300
AGKKMCSLDL GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-55281521113B3 domain-containing transcription factor NGA1
5os9_B3e-55281521113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613852.10.0putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN80.0Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLA0A0E0IVJ00.0A0A0E0IVJ0_ORYNI; Uncharacterized protein
TrEMBLA2Z9R30.0A2Z9R3_ORYSI; Uncharacterized protein
STRINGONIVA10G18740.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.16e-48B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]