PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G21500.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family STAT
Protein Properties Length: 744aa    MW: 82255.7 Da    PI: 6.1877
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G21500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT188.39.1e-592914111121
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                      l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k
  ONIVA10G21500.1 291 LEVILVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 383
                      79**********7.*********************9********************************************************** PP

             STAT  94 kypfleavskpirCisrsrntrsssltk 121
                      +ypflea+skpirCisr+r++r+++++k
  ONIVA10G21500.1 384 RYPFLEAYSKPIRCISRNRTSRPLGSAK 411
                      **********************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF555504.31E-5661730IPR000980SH2 domain
PROSITE profilePS500019.366668744IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MAAVSAVGLV RHRGRSSKAC VSLLSSPLPQ PSPWGVTLMS SDRHGWAARS LLDGLGRAQS  60
DKKSQAHLLG RTYSPTNRGR RTKPSIAASG DGGGGAGICG GGGDRYCELS DVRIELDLRE  120
EVAEGGGDKV PFLALGEGNK LILFPFLGFH REAPTPDSSY PWTDITNLTE VNECPLDNWF  180
HVGCEVTENI MRLHIDGDLV AETHLHSLYN EPDYQDDANQ INLLGSEDKL EGYVYNMELS  240
CMLGNIQQQF AKNPPFKLSI DYSCSDGIEE GDDGIWNIVG GKASCRRNFI LEVILVDAFG  300
EAAKDREIVA SLVYADNGAL VEKSRDDSEP PLLISCDGIE YPAVSRPLPI IRGRALFKLK  360
ISQLSSKCDN KLFRIFFSTL GMKRYPFLEA YSKPIRCISR NRTSRPLGSA KRIGSASMDD  420
IKSINNCEGF GHSGKANGRL QTHDPSSVVC FHPSKFSKIE DDVQKTSSQN KHAKKMVLDK  480
GAQDVMVSDS TASDYDSMDA GSSWSLSDGD DVESFSDAEI FRYCLDGTHE RSKFLRAAAP  540
SVNEDDLIKL ANQVSLYSGC THHRNQILIS KQLLQEGADI WSIISKNNER ALWSSAVPEM  600
KAKFLEIVHP SNRGLSEQDF EVLRGIAGCG DDIGRDEFDK LWSWLYPVAI ALSKDKINRL  660
WDFTAHRWIE GLITLQETEN ALRSSRDRLM KPGTFVLRFP TTRSWPHPDA GSLVVTYVGS  720
DNSIHHRLLS LDVRVDRLPS SMQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614084.10.0SH2 domain-containing protein A isoform X1
TrEMBLA0A0E0IWN30.0A0A0E0IWN3_ORYNI; Uncharacterized protein
STRINGONIVA10G21500.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-136SH2 domain protein B