PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G01050.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 206aa    MW: 23860.3 Da    PI: 6.8329
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G01050.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.37.1e-1948112259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                      +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  ONIVA11G01050.3  48 NDGHQWRKYGQKWISRAKHSRSYYRCANRkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 112
                      8**************************988889********99876522226899*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-2233112IPR003657WRKY domain
PROSITE profilePS5081114.6654289IPR003657WRKY domain
SuperFamilySSF1182908.63E-2043112IPR003657WRKY domain
SMARTSM007748.1E-2947113IPR003657WRKY domain
PfamPF031065.2E-2248112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MARYWSKRKG DKHSMDNHNL EEEAKESVSK RRKNAEHTGS TVAQAPHNDG HQWRKYGQKW  60
ISRAKHSRSY YRCANRKVQG CPATKTVQQM DSSGNGTSKL FNVDYYGQHT CRGDGIANPY  120
VVDTAHHSME PINQNECNSP TLEHEAHEVQ DERFENLCMV QNMPEYLIDF ELERAFEFIV  180
NSPLGSEHWT FDDSIRCEHS PICIWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020930.0AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616437.11e-151probable WRKY transcription factor 67
TrEMBLA0A0E0IXD21e-156A0A0E0IXD2_ORYNI; Uncharacterized protein
STRINGONIVA11G01050.11e-152(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-17WRKY DNA-binding protein 46