PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G01650.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 247aa    MW: 27250.4 Da    PI: 8.2062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G01650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.22.6e-2668562128
              NAM  62 skrdkkyatgkrknratksgyWkatgkdkevlsk.............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++d ky+tg r+nratk+gyWkatgkd+e+++              +++lvg+kktLvfy grapkg+kt+Wvmhe+rl
  ONIVA11G01650.1   6 CHKDMKYPTGMRTNRATKEGYWKATGKDREIFNLqptsyggssnnknNKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 85 
                      6899****************************9888999888887766677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.0291112IPR003441NAC domain
SuperFamilySSF1019412.75E-316112IPR003441NAC domain
PfamPF023651.4E-111585IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGEKECHKDM KYPTGMRTNR ATKEGYWKAT GKDREIFNLQ PTSYGGSSNN KNNKQLVGMK  60
KTLVFYMGRA PKGTKTNWVM HEFRLHANLH NDNPNLRLNP KDEWVVCKVF HKKGDDREAI  120
NKQQAQAAAV DQYSAGTPNN GSSVEAGDDD DDLFQLDSII DPSIYFSNSS AANILSAPPN  180
MSNSVVAANY GASTTTTAEG GVHGIGSSYS LQHQAAMVKA LRDVIRLPNP LGMPQYKLDD  240
AYLWDSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-24111368166NO APICAL MERISTEM PROTEIN
1ut4_B5e-24111368166NO APICAL MERISTEM PROTEIN
1ut7_A5e-24111368166NO APICAL MERISTEM PROTEIN
1ut7_B5e-24111368166NO APICAL MERISTEM PROTEIN
3swm_A6e-24111371169NAC domain-containing protein 19
3swm_B6e-24111371169NAC domain-containing protein 19
3swm_C6e-24111371169NAC domain-containing protein 19
3swm_D6e-24111371169NAC domain-containing protein 19
3swp_A6e-24111371169NAC domain-containing protein 19
3swp_B6e-24111371169NAC domain-containing protein 19
3swp_C6e-24111371169NAC domain-containing protein 19
3swp_D6e-24111371169NAC domain-containing protein 19
4dul_A5e-24111368166NAC domain-containing protein 19
4dul_B5e-24111368166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679220.0AK067922.1 Oryza sativa Japonica Group cDNA clone:J013121J10, full insert sequence.
GenBankCT8295090.0CT829509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103O19, full insert sequence.
GenBankKP0331910.0KP033191.1 Oryza sativa cultivar Dong Jin NAC-related protein 45 mRNA, complete cds.
GenBankKU1675490.0KU167549.1 Oryza sativa cultivar Moctuyen NAC family protein (NAC45) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615868.11e-156NAC domain-containing protein 45
SwissprotQ2RB331e-157NAC45_ORYSJ; NAC domain-containing protein 45
TrEMBLA0A0E0IXM80.0A0A0E0IXM8_ORYNI; Uncharacterized protein
STRINGONIVA11G01650.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.28e-39Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zheng X,Chen B,Lu G,Han B
    Overexpression of a NAC transcription factor enhances rice drought and salt tolerance.
    Biochem. Biophys. Res. Commun., 2009. 379(4): p. 985-9
    [PMID:19135985]