PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G01720.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 99aa    MW: 11464.9 Da    PI: 4.8998
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G01720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.1e-101438125
                     TSSS-HHHHHHHHHHHHHTTTT-HH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWk 25
                     +g+WT+eEd +lv +++++G+g+W+
  ONIVA11G01720.1 14 KGPWTPEEDIILVSYIQEHGPGNWR 38
                     79**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-12539IPR009057Homeodomain-like
PROSITE profilePS500907.097938IPR017877Myb-like domain
SuperFamilySSF466891.58E-8939IPR009057Homeodomain-like
PfamPF002493.9E-81439IPR001005SANT/Myb domain
CDDcd001676.26E-61639No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MGRPPCCDKE GIKKGPWTPE EDIILVSYIQ EHGPGNWRSP QIRQALDQRG EPDQAYELIE  60
HFEIEKIEHA MNDHSASPQA PLFRVWERIK LQAPIFFGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235254e-58AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBankAK2415494e-58AK241549.1 Oryza sativa Japonica Group cDNA, clone: J065176M15, full insert sequence.
GenBankAP0149674e-58AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126194e-58CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0IXN62e-67A0A0E0IXN6_ORYNI; Uncharacterized protein
STRINGONIVA11G01720.13e-68(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.14e-24myb domain protein 94