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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | ONIVA11G02940.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | GRAS | ||||||||
| Protein Properties | Length: 778aa MW: 87165.7 Da PI: 7.312 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 272.4 | 1.4e-83 | 20 | 435 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94
v lL ecA +v++g++e+a+ ++++ l ++ p+qRl + ++ La+rl++s ++l al ps+ + s+ aa++ f+++ P+l +
ONIVA11G02940.2 20 VPLLHECASHVTEGSFEKADFSFKKIRILT-IADGPLQRLSTIIVDSLAHRLLSSIQGLPGALiDPSDYF--EKSTLRAARHNFFKLNPYLSTG 110
6789**********************9875.5667*******************9999998874444443..35555567778*********** PP
GRAS 95 hltaNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
++t N aI+ea+e e+ vHi+D++ s ++ QW+ Ll+ + Rp+g+p+l +T++++ +++ l +++ L+k Ae+lgv+f+f v rl
ONIVA11G02940.2 111 FVTINWAIMEAMEDEKVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSLLSKKAESLGVSFHFIS-VIGRL 199
***********************8653389***************************....9**************************.799** PP
GRAS 187 edleleeLrvkp....gEalaVnlvlqlhrll.........................................desvsleserdevLklvksls 235
e+l++++Lr g a+a++++lq+hrll s +++ ++L++++ l+
ONIVA11G02940.2 200 ETLDFSNLRSTFqikfGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIQALK 293
********54444555*******************************************************98666777778899********* PP
GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
P+++ ++eq+adhn+ F +rf e l+yy+alfd+++a ++++ +er vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++
ONIVA11G02940.2 294 PNIMLIMEQDADHNTLLFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHN 387
************************************77654444456*********************************************** PP
GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
v+ls +a + k l ++ + + +e++g+++l+W +L+s+SaWr
ONIVA11G02940.2 388 VQLSFSAIREGKENLLSFGLKNCQNKEDRGCFLLCWGYTNLYSISAWR 435
*******************888*************************8 PP
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| 2 | GRAS | 46.1 | 8.6e-15 | 525 | 621 | 2 | 98 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
+ lL++cA vs+g++ +a+ +L+++ +las d+ ++qRlaa+f+ ALa++l++ ++l++al +s++s + + a++ ++v P+lk++
ONIVA11G02940.2 525 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLKLA 617
679*******************************9*****************************888887544.44446778899********* PP
GRAS 95 hlta 98
+l a
ONIVA11G02940.2 618 FLSA 621
9987 PP
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| 3 | GRAS | 163.7 | 1.6e-50 | 617 | 767 | 226 | 374 |
GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegaer+erhe++++W +r+
ONIVA11G02940.2 617 AFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVACEGAERVERHERARQWAARM 709
59********************************************999.68889*************************************** PP
GRAS 320 eeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
e+aG++ v ls++ a++a+ ll+ +++ g y+v ++ + ++++W++rpL++v+aWr
ONIVA11G02940.2 710 EAAGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 767
**************************8888****884345678**************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 38.697 | 1 | 415 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 5.0E-81 | 20 | 435 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 5.5E-48 | 617 | 767 | IPR005202 | Transcription factor GRAS |
| PROSITE profile | PS50985 | 17.621 | 619 | 744 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 778 aa Download sequence Send to blast |
MMHGLWVQDQ GVVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRILTI ADGPLQRLST 60 IIVDSLAHRL LSSIQGLPGA LIDPSDYFEK STLRAARHNF FKLNPYLSTG FVTINWAIME 120 AMEDEKVVHI VDLSCSAAHP WQWLKLLDDF HGRPGGAPEL YLTVLHDDND FLADMQSLLS 180 KKAESLGVSF HFISVIGRLE TLDFSNLRST FQIKFGVAVA ISCALQMHRL LLVDDNLSST 240 SIAQLQKMAN FTQPKQMASS VCSPASTLNY LQTPSPRTPK LLARLLSAIQ ALKPNIMLIM 300 EQDADHNTLL FRDRFNEVLN YYAALFDCFH AVAAANPGRT DERLRVERMI LREEIKNILV 360 CEGVHRHERH ERLDQWAMHM EESGFHNVQL SFSAIREGKE NLLSFGLKNC QNKEDRGCFL 420 LCWGYTNLYS ISAWRQNRGS SSGSREHILH PNFPLWVLCS AYVWQLKVQA DNLRLCCTDR 480 GMFQDDMLSS ATSSPASSVY SPSPSPSNGS WVQELSHDQQ SVRLIGLLYQ CAAEVSAGSF 540 DRANLCLEHI TQLASLDAPH ALQRLAAVFA DALARKLLNL IPGLSRALLS SANSADAHLV 600 PVARRHMFDV LPFLKLAFLS AVRSLSPKIM VMTEQEANHN GGAFQERFDE ALNYYASLFD 660 CLQRSAAAAA ERARVERVLL GEEIRGVVAC EGAERVERHE RARQWAARME AAGMERVGLS 720 YSGAMEARKL LQSCGWAGPY EVRHDAGGHG FFFCWHKRPL YAVTAWRPAA SRRGYTRP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 7e-26 | 25 | 434 | 25 | 378 | Protein SCARECROW |
| 5b3h_A | 8e-26 | 25 | 434 | 24 | 377 | Protein SCARECROW |
| 5b3h_D | 8e-26 | 25 | 434 | 24 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK242794 | 0.0 | AK242794.1 Oryza sativa Japonica Group cDNA, clone: J090058A05, full insert sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015616660.1 | 0.0 | scarecrow-like protein 3 isoform X1 | ||||
| TrEMBL | A0A0E0IY63 | 0.0 | A0A0E0IY63_ORYNI; Uncharacterized protein | ||||
| STRING | ONIVA11G02940.1 | 0.0 | (Oryza nivara) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G50420.1 | 6e-77 | scarecrow-like 3 | ||||




