PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G02940.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 778aa    MW: 87165.7 Da    PI: 7.312
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G02940.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.41.4e-83204352374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      v lL ecA +v++g++e+a+   ++++ l   ++ p+qRl + ++  La+rl++s ++l  al  ps+    + s+  aa++ f+++ P+l  +
  ONIVA11G02940.2  20 VPLLHECASHVTEGSFEKADFSFKKIRILT-IADGPLQRLSTIIVDSLAHRLLSSIQGLPGALiDPSDYF--EKSTLRAARHNFFKLNPYLSTG 110
                      6789**********************9875.5667*******************9999998874444443..35555567778*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++t N aI+ea+e e+ vHi+D++ s  ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l  +++ L+k Ae+lgv+f+f   v  rl
  ONIVA11G02940.2 111 FVTINWAIMEAMEDEKVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSLLSKKAESLGVSFHFIS-VIGRL 199
                      ***********************8653389***************************....9**************************.799** PP

             GRAS 187 edleleeLrvkp....gEalaVnlvlqlhrll.........................................desvsleserdevLklvksls 235
                      e+l++++Lr       g a+a++++lq+hrll                                           s  +++   ++L++++ l+
  ONIVA11G02940.2 200 ETLDFSNLRSTFqikfGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIQALK 293
                      ********54444555*******************************************************98666777778899********* PP

             GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                      P+++ ++eq+adhn+  F +rf e l+yy+alfd+++a ++++    +er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++
  ONIVA11G02940.2 294 PNIMLIMEQDADHNTLLFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHN 387
                      ************************************77654444456*********************************************** PP

             GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      v+ls +a  + k  l  ++ +  + +e++g+++l+W   +L+s+SaWr
  ONIVA11G02940.2 388 VQLSFSAIREGKENLLSFGLKNCQNKEDRGCFLLCWGYTNLYSISAWR 435
                      *******************888*************************8 PP

2GRAS46.18.6e-15525621298
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++  ++l++al +s++s +    +  a++  ++v P+lk++
  ONIVA11G02940.2 525 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLKLA 617
                      679*******************************9*****************************888887544.44446778899********* PP

             GRAS  95 hlta 98 
                      +l a
  ONIVA11G02940.2 618 FLSA 621
                      9987 PP

3GRAS163.71.6e-50617767226374
             GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
                      ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegaer+erhe++++W +r+
  ONIVA11G02940.2 617 AFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVACEGAERVERHERARQWAARM 709
                      59********************************************999.68889*************************************** PP

             GRAS 320 eeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                      e+aG++ v ls++ a++a+ ll+ +++ g y+v ++   + ++++W++rpL++v+aWr
  ONIVA11G02940.2 710 EAAGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 767
                      **************************8888****884345678**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.6971415IPR005202Transcription factor GRAS
PfamPF035145.0E-8120435IPR005202Transcription factor GRAS
PfamPF035145.5E-48617767IPR005202Transcription factor GRAS
PROSITE profilePS5098517.621619744IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MMHGLWVQDQ GVVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRILTI ADGPLQRLST  60
IIVDSLAHRL LSSIQGLPGA LIDPSDYFEK STLRAARHNF FKLNPYLSTG FVTINWAIME  120
AMEDEKVVHI VDLSCSAAHP WQWLKLLDDF HGRPGGAPEL YLTVLHDDND FLADMQSLLS  180
KKAESLGVSF HFISVIGRLE TLDFSNLRST FQIKFGVAVA ISCALQMHRL LLVDDNLSST  240
SIAQLQKMAN FTQPKQMASS VCSPASTLNY LQTPSPRTPK LLARLLSAIQ ALKPNIMLIM  300
EQDADHNTLL FRDRFNEVLN YYAALFDCFH AVAAANPGRT DERLRVERMI LREEIKNILV  360
CEGVHRHERH ERLDQWAMHM EESGFHNVQL SFSAIREGKE NLLSFGLKNC QNKEDRGCFL  420
LCWGYTNLYS ISAWRQNRGS SSGSREHILH PNFPLWVLCS AYVWQLKVQA DNLRLCCTDR  480
GMFQDDMLSS ATSSPASSVY SPSPSPSNGS WVQELSHDQQ SVRLIGLLYQ CAAEVSAGSF  540
DRANLCLEHI TQLASLDAPH ALQRLAAVFA DALARKLLNL IPGLSRALLS SANSADAHLV  600
PVARRHMFDV LPFLKLAFLS AVRSLSPKIM VMTEQEANHN GGAFQERFDE ALNYYASLFD  660
CLQRSAAAAA ERARVERVLL GEEIRGVVAC EGAERVERHE RARQWAARME AAGMERVGLS  720
YSGAMEARKL LQSCGWAGPY EVRHDAGGHG FFFCWHKRPL YAVTAWRPAA SRRGYTRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-262543425378Protein SCARECROW
5b3h_A8e-262543424377Protein SCARECROW
5b3h_D8e-262543424377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427940.0AK242794.1 Oryza sativa Japonica Group cDNA, clone: J090058A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616660.10.0scarecrow-like protein 3 isoform X1
TrEMBLA0A0E0IY630.0A0A0E0IY63_ORYNI; Uncharacterized protein
STRINGONIVA11G02940.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.16e-77scarecrow-like 3