PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G02940.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 586aa    MW: 63441.4 Da    PI: 7.9098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G02940.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.21.2e-92344814374
             GRAS   4 lLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                      +LlecA +v++g +e+a+++Lar   l  a+ +g  p +Rla  ++  La+rl+r v+ + +al  ps     +  ++ aa++ f+e+sP++k+
  ONIVA11G02940.3  34 ALLECAAHVETGPMEKATRCLARATGLaaAAAAGdGPRKRLAVAMVDCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFPKV 125
                      79*********************99996555556479***********************99995444443..34555578899********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ++++ N+aI+eave+e+ vH++ ++   +q+ QW+ Ll++L  Rpegpp  +R+T+v++    + e l +++e  ++ Aeelg++f+f+  v+ 
  ONIVA11G02940.3 126 AFVVGNRAIVEAVENESLVHVVGMSgpFTQPCQWIQLLHELRRRPEGPPrVVRLTVVHD----DGELLAKMEELVSDEAEELGMEFQFHG-VVG 214
                      ************************86679****************9988789*******....***************************.799 PP

             GRAS 185 rledleleeL....rvkpgEalaVnlvlqlhrll............................................................ 214
                      +ledl++++L    ++k+gEal+V++ lqlhrll                                                            
  ONIVA11G02940.3 215 QLEDLDFSNLrnvlEIKSGEALVVSCTLQLHRLLaadddamyssrsahlnqmasiaqlqhmavnscpsssgggsvqykdddpyrspatpltfvs 308
                      9****9999866667889**************************************************************************** PP

             GRAS 215 ........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres........eerikvErellg 291
                              + +++l     ++L++v+ lsPk++vv+eq+adhn+ sF +rf+eal++y+a+fdsl +a ++++s        +er+ vEr+++g
  ONIVA11G02940.3 309 ppvstphfQTPAAL----ASFLSAVRALSPKILVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLdDAAAATTSaashlwspDERAQVERVVVG 398
                      *9986555555555....55*********************************************766666666788899999*********** PP

             GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +ei+ v+   ga+rre h +l++W +r+e+aGF+ vpls+ a  + + ++r+++ +  + +e  g+l+l+W++rpL+s+SaWr
  ONIVA11G02940.3 399 EEIKGVLLRDGAHRREWHDRLRQWAARMEMAGFTGVPLSYAAIRKGNDMVRRCGLRRCENKECGGCLLLCWSSRPLYSISAWR 481
                      ******************************************************887999999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.5995461IPR005202Transcription factor GRAS
PfamPF035144.2E-9034481IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MFSGTDASSP ELSLCSPYGP WTQGRSPTEE LGLALLECAA HVETGPMEKA TRCLARATGL  60
AAAAAAGDGP RKRLAVAMVD CLARRLLRPV QAITDALIDP SVYLDRRSVR AARRGFFELS  120
PFPKVAFVVG NRAIVEAVEN ESLVHVVGMS GPFTQPCQWI QLLHELRRRP EGPPRVVRLT  180
VVHDDGELLA KMEELVSDEA EELGMEFQFH GVVGQLEDLD FSNLRNVLEI KSGEALVVSC  240
TLQLHRLLAA DDDAMYSSRS AHLNQMASIA QLQHMAVNSC PSSSGGGSVQ YKDDDPYRSP  300
ATPLTFVSPP VSTPHFQTPA ALASFLSAVR ALSPKILVVA EQDADHNGVS FRKRFCEALH  360
HYAAVFDSLD DAAAATTSAA SHLWSPDERA QVERVVVGEE IKGVLLRDGA HRREWHDRLR  420
QWAARMEMAG FTGVPLSYAA IRKGNDMVRR CGLRRCENKE CGGCLLLCWS SRPLYSISAW  480
RPAASRGSGS GSERSDPHTD PPCRVGRSAA APAMSASLHR PALASLLQIG AGGCGVLGVF  540
APGPRFPCRG YHPCRSSSTL GSASLTPRRW HISPPGLRIR DVLLKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-133748225380Protein SCARECROW
5b3h_A1e-133748224379Protein SCARECROW
5b3h_D1e-133748224379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619131.10.0scarecrow-like protein 3
TrEMBLA0A0E0IY640.0A0A0E0IY64_ORYNI; Uncharacterized protein
STRINGONIVA11G02940.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-70scarecrow-like 3