PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G03780.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 680aa    MW: 70018.8 Da    PI: 6.5764
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G03780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093804171954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  ONIVA11G03780.1 380 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 417
                      664459******************************88 PP
2BELL118.33.6e-38241312172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqelq+kk kL+++l+eV++rY+qy++q+q+v++sFeavag gsa+ Yt+lAl++iSr+FrcL+daia+q+
  ONIVA11G03780.1 241 ERQELQMKKGKLINMLDEVEQRYRQYHQQMQVVVASFEAVAGGGSARTYTALALRTISRQFRCLRDAIAGQV 312
                      79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-61159310IPR006563POX domain
PfamPF075264.2E-50167309IPR006563POX domain
PROSITE profilePS5007112.228358421IPR001356Homeobox domain
CDDcd000863.75E-13361422No hitNo description
SMARTSM003891.2E-9361425IPR001356Homeobox domain
SuperFamilySSF466893.59E-17362428IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-29364427IPR009057Homeodomain-like
PfamPF059202.6E-18378417IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQSGTDGL QTLYLMNPSY AGYGDAAAAA PGAAANMMLL NSAVTSMTPV  60
SFGHQPSPSS SSAAQHFVGI PLQAPPASGY NLWTPAAATG AGDMSPPTPQ HQHQQAHGGG  120
AAGVSAVLSL SSREAAPPVT VAAVVAAGDE GKYLQAVAQG AASQGQMVMS SKYLKAAQEL  180
LDEVVSVSKG VDDVKAAAAA KSPASVKKKE DSEGVSGGGT EDGGGAKSGG APPPPEMSTA  240
ERQELQMKKG KLINMLDEVE QRYRQYHQQM QVVVASFEAV AGGGSARTYT ALALRTISRQ  300
FRCLRDAIAG QVRAASRALG EAVDADGGCG RTVGSRLRYI DHQLRQQRAL QQLGMMQSSA  360
WRPQRGLPER SVSILRAWLF EHFLHPYPKD SDKIMLAKQT GLTRSQVSNW FINARVRLWK  420
PMVEEMYLEE TKDQDGGGGA GAGDEGSKPG GSKGGGAGVN GGVVDSAAKM DSKAAHMESG  480
GGVHPSLLEL AGDHQAQAGF YDDDDDEDGG AAAALQQKLK KARTEEQQQA AFHVSDVATL  540
HAHAAAAAAA RHDEVSHREL LMKFMESGSA GAGAAARDHH HEHHGGVGYS LFAPAPYGQF  600
ATEQFAFAGH GGGGGGGGVS LTLGLPHGAE QTASFLMTSS NGSDGAGHVA GGGGGGGGGY  660
DMNMQSTKSF AAQLMRDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-17367425563Homeobox protein Meis2
4xrm_B3e-17367425563Homeobox protein Meis2
5bng_A2e-17367425159Homeobox protein Meis2
5bng_B2e-17367425159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332170.0AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616922.10.0BEL1-like homeodomain protein 1
RefseqXP_015616923.10.0BEL1-like homeodomain protein 1
RefseqXP_015616924.10.0BEL1-like homeodomain protein 1
RefseqXP_015616925.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-113BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0E0IYH60.0A0A0E0IYH6_ORYNI; Uncharacterized protein
STRINGONIVA11G03780.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-89BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]