PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G04380.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 410aa    MW: 43083.2 Da    PI: 9.0391
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G04380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.2e-06193216123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++CpdC+++F  +++L+ H +t H
  ONIVA11G04380.1 193 FSCPDCDEVFVKPDSLELHRSTrH 216
                      89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.203193217IPR007087Zinc finger, C2H2
PROSITE patternPS000280195216IPR007087Zinc finger, C2H2
SuperFamilySSF563992.95E-15219409No hitNo description
Gene3DG3DSA:3.90.228.102.7E-5337408IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEASAAKEKD KGGKKMSRVG SWGSMAFYSS SSSSRSQPVS AAEGKNGGKK EKRRSSISRS  60
ITCAGSICST KESSVSSRGR GRRRRSGGGG GGDGGGGGST SSRSLMGPGY HGDSAAAVSA  120
SSSFNSVMTA ATFATATTTT TTTSSSATSP PSALSSPLSS IGGSFRAMQI RKLSGCYLHC  180
HSVLDPRTLA AVFSCPDCDE VFVKPDSLEL HRSTRHAELG ADDTSRNIVE IIFQSSWLKK  240
NAPVCRIERI LKVQSSDKTI KRFEQHKEAV KEKARSAGDE AGRNPRCVAD GNELLRFHCT  300
TFACSLGLAG GTALCCASSV DGNGRITTMA TSGRAHDTAE VSPDGEKRAM LVCRVVAGRV  360
KKLHSSNSSE DHDCDSVSPC SEGVYSDLDE LFVFSPRAIL PCFIVIYSGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18598SGGGGGGDGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109480.0AK110948.1 Oryza sativa Japonica Group cDNA clone:002-173-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616600.10.0uncharacterized protein LOC4349886
TrEMBLA0A0E0IYQ60.0A0A0E0IYQ6_ORYNI; Uncharacterized protein
STRINGONIVA11G04380.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-74C2H2-like zinc finger protein