PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G08980.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 1011aa MW: 111733 Da PI: 6.3436

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G08980.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.2e-29	651	701	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ ONIVA11G08980.1 651 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 701 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	640	721	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-26	654	701	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.9E-23	898	993	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.1E-25	904	986	No hit	No description
SMART	SM00666	4.1E-26	907	989	IPR000270	PB1 domain
Pfam	PF00564	9.7E-19	907	988	IPR000270	PB1 domain
PROSITE profile	PS51745	27.129	907	989	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1011 aa Download sequence Send to blast
MPPLPISPLT RTVNSSLFHF LFSSSSPPAA SGRPASRAEQ RREPTSIWAP IEAEAVRIEK 60 MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV 120 STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML 180 RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE 240 GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC 300 AVLEVVMTRE KDNFCLEMVN VSNALQAFNN PLFLLCAAQR YAQLQCNTAK YLFKELSTVA 360 SELNSDIVIL QSVQLSTVNA WRHSQSYSRD QKLALMEIFD VLQAVCQAHL LPLALAWIPV 420 CSKRDVLVSV EYGANFGKRN KEVLCIEESA CYVNDTRMRD FVQVCAEHPL EKGQGVAGNA 480 YLSNNPFFSS DVKDYDMHAY PLVNHARKFG LHAAVAIRLR STYTKNDDYV LEFFLPVLCK 540 GGGEQQLLLD SISVTMRRVC KSLRTVSDAE LKEDVTRKPS NENRSGTRCP SPVNLIYSGR 600 EIDVSNETKT NTPLEYQIEG IDEQLSDTKS TNKLIKCSNA SDGEKRRSST EKSVSLSVLQ 660 QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKIKK VNRSLKKIQN VISSVHGVEG 720 VLKYDPSTGC LVSSVSPSIE PVLMNVEHKG SDPLPIESEL PHLNFEPDCD AYRREHAGQD 780 VLQKLQNKQN GEINFDMDDG ELFRNSHSTR TLSGAFCEDM PNGLYVAREM TCVAKTGTRT 840 ERLEHKPSSR DTFSAPQEYR MESETDKSNK NSKQSLPSSS SMTDCSTSSG ETFKSIKSQS 900 ANESNKTVAV KASYKNDTIR FKLLPSMKYE QLLEEIAKRL KLSIGLFQLK YKDDEGDWVI 960 LASDADLQEC LEILDTTRLR ILKLQVQDVV CPIGSSSERC GFGSTVIDLF I

Sequence ? help Back to Top

Protein Sequence Length: 1011 aa Download sequence Send to blast

MPPLPISPLT RTVNSSLFHF LFSSSSPPAA SGRPASRAEQ RREPTSIWAP IEAEAVRIEK  60
MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV  120
STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML  180
RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE  240
GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC  300
AVLEVVMTRE KDNFCLEMVN VSNALQAFNN PLFLLCAAQR YAQLQCNTAK YLFKELSTVA  360
SELNSDIVIL QSVQLSTVNA WRHSQSYSRD QKLALMEIFD VLQAVCQAHL LPLALAWIPV  420
CSKRDVLVSV EYGANFGKRN KEVLCIEESA CYVNDTRMRD FVQVCAEHPL EKGQGVAGNA  480
YLSNNPFFSS DVKDYDMHAY PLVNHARKFG LHAAVAIRLR STYTKNDDYV LEFFLPVLCK  540
GGGEQQLLLD SISVTMRRVC KSLRTVSDAE LKEDVTRKPS NENRSGTRCP SPVNLIYSGR  600
EIDVSNETKT NTPLEYQIEG IDEQLSDTKS TNKLIKCSNA SDGEKRRSST EKSVSLSVLQ  660
QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKIKK VNRSLKKIQN VISSVHGVEG  720
VLKYDPSTGC LVSSVSPSIE PVLMNVEHKG SDPLPIESEL PHLNFEPDCD AYRREHAGQD  780
VLQKLQNKQN GEINFDMDDG ELFRNSHSTR TLSGAFCEDM PNGLYVAREM TCVAKTGTRT  840
ERLEHKPSSR DTFSAPQEYR MESETDKSNK NSKQSLPSSS SMTDCSTSSG ETFKSIKSQS  900
ANESNKTVAV KASYKNDTIR FKLLPSMKYE QLLEEIAKRL KLSIGLFQLK YKDDEGDWVI  960
LASDADLQEC LEILDTTRLR ILKLQVQDVV CPIGSSSERC GFGSTVIDLF I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616880.1	0.0	protein NLP2-like isoform X1
Refseq	XP_015616881.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A0E0J0F9	0.0	A0A0E0J0F9_ORYNI; Uncharacterized protein
STRING	ONIVA11G08980.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-170	Nin-like family protein