PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G08980.7

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 924aa MW: 101902 Da PI: 6.5632

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G08980.7	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.9e-29	592	642	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ ONIVA11G08980.7 592 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 642 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	581	662	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-26	595	642	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.67E-23	811	906	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.4E-25	817	899	No hit	No description
Pfam	PF00564	8.6E-19	820	901	IPR000270	PB1 domain
SMART	SM00666	4.1E-26	820	902	IPR000270	PB1 domain
PROSITE profile	PS51745	27.129	820	902	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence Send to blast
MPPLPISPLT RTVNSSLFHF LFSSSSPPAA SGRPASRAEQ RREPTSIWAP IEAEAVRIEK 60 MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV 120 STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML 180 RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE 240 GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC 300 AVLEVVMTRE KDNFCLEMVN VSNALQSYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP 360 VCSKRDVLVS VEYGANFGKR NKEVLCIEES ACYVNDTRMR DFVQVCAEHP LEKGQGVAGN 420 AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLHAAVAIRL RSTYTKNDDY VLEFFLPVLC 480 KGGGEQQLLL DSISVTMRRV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG 540 REIDVSNETK TNTPLEYQIE GIDEQLSDTK STNKLIKCSN ASDGEKRRSS TEKSVSLSVL 600 QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE 660 GVLKYDPSTG CLVSSVSPSI EPVLMNVEHK GQDVLQKLQN KQNGEINFDM DDGELFRNSH 720 STRTLSGAFC EDMPNGLYVA REMTCVAKTG TRTERLEHKP SSRDTFSAPQ EYRMESETDK 780 SNKNSKQSLP SSSSMTDCST SSGETFKSIK SQSANESNKT VAVKASYKND TIRFKLLPSM 840 KYEQLLEEIA KRLKLSIGLF QLKYKDDEGD WVILASDADL QECLEILDTT RLRILKLQVQ 900 DVVCPIGSSS ERCGFGSTVI DLFI

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence Send to blast

MPPLPISPLT RTVNSSLFHF LFSSSSPPAA SGRPASRAEQ RREPTSIWAP IEAEAVRIEK  60
MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV  120
STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML  180
RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE  240
GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC  300
AVLEVVMTRE KDNFCLEMVN VSNALQSYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP  360
VCSKRDVLVS VEYGANFGKR NKEVLCIEES ACYVNDTRMR DFVQVCAEHP LEKGQGVAGN  420
AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLHAAVAIRL RSTYTKNDDY VLEFFLPVLC  480
KGGGEQQLLL DSISVTMRRV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG  540
REIDVSNETK TNTPLEYQIE GIDEQLSDTK STNKLIKCSN ASDGEKRRSS TEKSVSLSVL  600
QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE  660
GVLKYDPSTG CLVSSVSPSI EPVLMNVEHK GQDVLQKLQN KQNGEINFDM DDGELFRNSH  720
STRTLSGAFC EDMPNGLYVA REMTCVAKTG TRTERLEHKP SSRDTFSAPQ EYRMESETDK  780
SNKNSKQSLP SSSSMTDCST SSGETFKSIK SQSANESNKT VAVKASYKND TIRFKLLPSM  840
KYEQLLEEIA KRLKLSIGLF QLKYKDDEGD WVILASDADL QECLEILDTT RLRILKLQVQ  900
DVVCPIGSSS ERCGFGSTVI DLFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616882.1	0.0	protein NLP2-like isoform X2
TrEMBL	A0A0E0J0G8	0.0	A0A0E0J0G8_ORYNI; Uncharacterized protein
STRING	ONIVA11G08980.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-175	Nin-like family protein