PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G08980.8

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 896aa MW: 99009.4 Da PI: 6.5103

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G08980.8	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.8e-29	564	614	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ ONIVA11G08980.8 564 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 614 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	553	634	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-26	567	614	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.6E-23	783	878	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.2E-25	789	871	No hit	No description
PROSITE profile	PS51745	27.129	792	874	IPR000270	PB1 domain
Pfam	PF00564	8.2E-19	792	873	IPR000270	PB1 domain
SMART	SM00666	4.1E-26	792	874	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV 60 STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML 120 RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE 180 GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC 240 AVLEVVMTRE KDNFCLEMVN VSNALQAFNN PLFLLCAAQR YAQLQCNTAK YLFKELSTSY 300 SRDQKLALME IFDVLQAVCQ AHLLPLALAW IPVCSKRDVL VSVEYGANFG KRNKEVLCIE 360 ESACYVNDTR MRDFVQVCAE HPLEKGQGVA GNAYLSNNPF FSSDVKDYDM HAYPLVNHAR 420 KFGLHAAVAI RLRSTYTKND DYVLEFFLPV LCKGGGEQQL LLDSISVTMR RVCKSLRTVS 480 DAELKEDVTR KPSNENRSGT RCPSPVNLIY SGREIDVSNE TKTNTPLEYQ IEGIDEQLSD 540 TKSTNKLIKC SNASDGEKRR SSTEKSVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ 600 HGISRWPSRK IKKVNRSLKK IQNVISSVHG VEGVLKYDPS TGCLVSSVSP SIEPVLMNVE 660 HKGQDVLQKL QNKQNGEINF DMDDGELFRN SHSTRTLSGA FCEDMPNGLY VAREMTCVAK 720 TGTRTERLEH KPSSRDTFSA PQEYRMESET DKSNKNSKQS LPSSSSMTDC STSSGETFKS 780 IKSQSANESN KTVAVKASYK NDTIRFKLLP SMKYEQLLEE IAKRLKLSIG LFQLKYKDDE 840 GDWVILASDA DLQECLEILD TTRLRILKLQ VQDVVCPIGS SSERCGFGST VIDLFI

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV  60
STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML  120
RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE  180
GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC  240
AVLEVVMTRE KDNFCLEMVN VSNALQAFNN PLFLLCAAQR YAQLQCNTAK YLFKELSTSY  300
SRDQKLALME IFDVLQAVCQ AHLLPLALAW IPVCSKRDVL VSVEYGANFG KRNKEVLCIE  360
ESACYVNDTR MRDFVQVCAE HPLEKGQGVA GNAYLSNNPF FSSDVKDYDM HAYPLVNHAR  420
KFGLHAAVAI RLRSTYTKND DYVLEFFLPV LCKGGGEQQL LLDSISVTMR RVCKSLRTVS  480
DAELKEDVTR KPSNENRSGT RCPSPVNLIY SGREIDVSNE TKTNTPLEYQ IEGIDEQLSD  540
TKSTNKLIKC SNASDGEKRR SSTEKSVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ  600
HGISRWPSRK IKKVNRSLKK IQNVISSVHG VEGVLKYDPS TGCLVSSVSP SIEPVLMNVE  660
HKGQDVLQKL QNKQNGEINF DMDDGELFRN SHSTRTLSGA FCEDMPNGLY VAREMTCVAK  720
TGTRTERLEH KPSSRDTFSA PQEYRMESET DKSNKNSKQS LPSSSSMTDC STSSGETFKS  780
IKSQSANESN KTVAVKASYK NDTIRFKLLP SMKYEQLLEE IAKRLKLSIG LFQLKYKDDE  840
GDWVILASDA DLQECLEILD TTRLRILKLQ VQDVVCPIGS SSERCGFGST VIDLFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616882.1	0.0	protein NLP2-like isoform X2
TrEMBL	A0A0E0J0G3	0.0	A0A0E0J0G3_ORYNI; Uncharacterized protein
STRING	ONIVA11G08980.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-175	Nin-like family protein