PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G13830.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 182aa    MW: 20782.7 Da    PI: 9.0779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G13830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS23.75.4e-08337165200
             GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                      L k Ae+l+vpf+fn+ v++rl++l++e+Lrvk+gE
  ONIVA11G13830.1   3 LMKEAERLDVPFQFNP-VVSRLDALDVESLRVKTGE 37 
                      7899************.7****************99 PP
2GRAS96.53.9e-3055171235361
             GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                      sPkv+vv+ qea+hn++ + erf+eal+yy+alfd le++++r s e + vEr llg+ei+n+      +    he+le+W +rle aGF+ vp
  ONIVA11G13830.1  55 SPKVMVVTKQEASHNAALLTERFVEALNYYAALFDGLEVGAARGSVEHTRVERWLLGEEIMNI------W----HERLERWVRRLEGAGFGRVP 138
                      8*************************************************************8......4....89999*************** PP

             GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlg 361
                      ls++a  qa+++ +  + dg++v ee+g ++l 
  ONIVA11G13830.1 139 LSYYALLQARRVAQGLGCDGFKVREEKGNFFLF 171
                      ****************************99873 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.2181164IPR005202Transcription factor GRAS
PfamPF035141.9E-5337IPR005202Transcription factor GRAS
PfamPF035141.4E-2755171IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MALMKEAERL DVPFQFNPVV SRLDALDVES LRVKTGERRS QESGLSPSTS RADASPKVMV  60
VTKQEASHNA ALLTERFVEA LNYYAALFDG LEVGAARGSV EHTRVERWLL GEEIMNIWHE  120
RLERWVRRLE GAGFGRVPLS YYALLQARRV AQGLGCDGFK VREEKGNFFL FFVSTWRGRR  180
FD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-167179183381Protein SCARECROW
5b3h_A2e-167179182380Protein SCARECROW
5b3h_D2e-167179182380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241511e-128AC124151.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0019E05, complete sequence.
GenBankAP0149671e-128AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819415.14e-94scarecrow-like protein 3
RefseqXP_025819416.14e-94scarecrow-like protein 3
SwissprotQ9LPR83e-38SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0E0J2711e-129A0A0E0J271_ORYNI; Uncharacterized protein
STRINGONIVA11G13830.11e-130(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-40scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]