PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G13990.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 780aa MW: 81942.3 Da PI: 6.5944

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G13990.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	428.7	4.8e-131	412	779	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPil 91 lv+lLl+cA+ vs+gd+ +a + L l+ asp gd+mqR+a++f+ ALaarl+ +s ++++ +p++++++ s e+l++++++++++P++ ONIVA11G13990.1 412 LVHLLLACADLVSKGDHPAALRHLHLLRRVASPLGDSMQRVASHFADALAARLSLLSSPTSASPSPRAAAPYPfppSPETLKVYQILYQACPYI 505 68***************************************************899999999999999888999************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+ +++etg+ La++A++l+vpfef++ +a+r ONIVA11G13990.1 506 KFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PPAAVRETGRHLASLAASLRVPFEFHAAAADR 595 ******************************************************....99**********************9999 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 le l++ +L+ + gEalaVn v +lhr++ +s+ + +L+++++ Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p+es ONIVA11G13990.1 596 LERLRPAALHRRVGEALAVNAVNRLHRVP------SSHLPPLLSMIRDQAPKIITLVEQEAAHNGPYFLGRFLEALHYYSAIFDSLDATFPAES 683 **************************9......445566************************************************* PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 +r+kvE+ ll++ei+nvvacegaer++rhe+le+Wr+ +e GF++vpls a+ q + ll ++ +dgyr+ e+sg+l+lgW+dr+++++Sa ONIVA11G13990.1 684 TARMKVEQCLLAPEIRNVVACEGAERVARHERLERWRRLMEGRGFEAVPLSAAAVGQSQVLLGLYGaGDGYRLTEDSGCLLLGWQDRAIIAASA 777 ******************************************************************************************** PP GRAS 373 Wr 374 Wr ONIVA11G13990.1 778 WR 779 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.57	386	758	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-128	412	779	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence Send to blast
MGTTTMLNAA DMAGGRAKLQ QQQAPTSPTA SVSESNIVAS TASADPEAND ALAGLQALRF 60 DGGGDIDDVE IQSPDIALWE SIFADQIGVS GAGADFLLSM SSAAASPRRD FMACSPKRDY 120 MVTTSSPKRD YMVTSSPKRD YMVSSPKREY MVTSPRREMA TSPRRATFSN LYTSSHGGGG 180 GGGHHLHHQS YVHGGGMEGG GGGHGAQPQY GGLVGHGKGK AQSPLHKVYI NNVGGGSGGG 240 GVKSNTPSTL SCSSSYVVHG GESGLPSLPS MDPFLEEGYL GSYQLPEKAA GGVGGGGGGD 300 INGSGASASV VTAPASSQLL PTLSECLAMP EPAYRGGGDE AVAAAMAVAG ELPVGAFVQP 360 ELYYGGGGGE FGGEGMAPPL QHQMAADSSL HSMLGSVIQS EAEQEQDSGL QLVHLLLACA 420 DLVSKGDHPA ALRHLHLLRR VASPLGDSMQ RVASHFADAL AARLSLLSSP TSASPSPRAA 480 APYPFPPSPE TLKVYQILYQ ACPYIKFAHF TANQAIFEAF HGEDRVHVVD LDILQGYQWP 540 AFLQALAARP GGPPTLRLTG VGHPPAAVRE TGRHLASLAA SLRVPFEFHA AAADRLERLR 600 PAALHRRVGE ALAVNAVNRL HRVPSSHLPP LLSMIRDQAP KIITLVEQEA AHNGPYFLGR 660 FLEALHYYSA IFDSLDATFP AESTARMKVE QCLLAPEIRN VVACEGAERV ARHERLERWR 720 RLMEGRGFEA VPLSAAAVGQ SQVLLGLYGA GDGYRLTEDS GCLLLGWQDR AIIAASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence Send to blast

MGTTTMLNAA DMAGGRAKLQ QQQAPTSPTA SVSESNIVAS TASADPEAND ALAGLQALRF  60
DGGGDIDDVE IQSPDIALWE SIFADQIGVS GAGADFLLSM SSAAASPRRD FMACSPKRDY  120
MVTTSSPKRD YMVTSSPKRD YMVSSPKREY MVTSPRREMA TSPRRATFSN LYTSSHGGGG  180
GGGHHLHHQS YVHGGGMEGG GGGHGAQPQY GGLVGHGKGK AQSPLHKVYI NNVGGGSGGG  240
GVKSNTPSTL SCSSSYVVHG GESGLPSLPS MDPFLEEGYL GSYQLPEKAA GGVGGGGGGD  300
INGSGASASV VTAPASSQLL PTLSECLAMP EPAYRGGGDE AVAAAMAVAG ELPVGAFVQP  360
ELYYGGGGGE FGGEGMAPPL QHQMAADSSL HSMLGSVIQS EAEQEQDSGL QLVHLLLACA  420
DLVSKGDHPA ALRHLHLLRR VASPLGDSMQ RVASHFADAL AARLSLLSSP TSASPSPRAA  480
APYPFPPSPE TLKVYQILYQ ACPYIKFAHF TANQAIFEAF HGEDRVHVVD LDILQGYQWP  540
AFLQALAARP GGPPTLRLTG VGHPPAAVRE TGRHLASLAA SLRVPFEFHA AAADRLERLR  600
PAALHRRVGE ALAVNAVNRL HRVPSSHLPP LLSMIRDQAP KIITLVEQEA AHNGPYFLGR  660
FLEALHYYSA IFDSLDATFP AESTARMKVE QCLLAPEIRN VVACEGAERV ARHERLERWR  720
RLMEGRGFEA VPLSAAAVGQ SQVLLGLYGA GDGYRLTEDS GCLLLGWQDR AIIAASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-84	419	778	25	377	Protein SCARECROW
5b3h_D	3e-84	419	778	25	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	0.0	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616711.1	0.0	DELLA protein RHT-1
TrEMBL	A0A0E0J288	0.0	A0A0E0J288_ORYNI; Uncharacterized protein
STRING	ONIVA11G13990.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9221	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-92	RGA-like 1