PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G14160.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 255aa    MW: 27865.8 Da    PI: 7.434
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G14160.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.38.4e-082564848
              NAM  8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                     hPt+ elv +yL +++ + +l+  e+i +v+i++++Pwd+ 
  ONIVA11G14160.2 25 HPTEGELVFHYLYRRAVNMPLPS-EFICDVNILRHNPWDIV 64
                     9********************99.89*************94 PP
2NAM286.1e-096611287128
              NAM  87 gkdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                      g++k+v+ +  +        vg+++tL+fy g+++++e+t+W m+e+rl
  ONIVA11G14160.2  66 GSEKPVYYNqgG--GsdcmlVGMRRTLTFYFGNSRTAERTKWGMQEFRL 112
                      667777776441..234455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.8281181IPR003441NAC domain
SuperFamilySSF1019414.58E-2116122IPR003441NAC domain
PfamPF023651.1E-725112IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MARVVLSTPI VNGATMHLPA VGMSHPTEGE LVFHYLYRRA VNMPLPSEFI CDVNILRHNP  60
WDIVPGSEKP VYYNQGGGSD CMLVGMRRTL TFYFGNSRTA ERTKWGMQEF RLAGNGLSPY  120
PAMKHATGDG SKPPCNCAET TIAKRNDGLS AVLRNVLAVT PLVETVVEPD GSWLICRIYR  180
TRQRALPVIT PPAIENAREI IIPPANGNAR EAQVRFIDFL RQGSHIESSS PCSCIVGPSL  240
AEGSDESAGS VDQKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9401960.0FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.11e-89NAC transcription factor 25
TrEMBLA0A0E0J2A50.0A0A0E0J2A5_ORYNI; Uncharacterized protein
STRINGONIVA11G14160.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.23e-14NAC domain containing protein 41