PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G23180.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 532aa MW: 59066.2 Da PI: 4.5588

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G23180.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	47.7	2.8e-15	304	361	2	59
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse 59 +lL++cA+av+++d + a++lL+++++++s +gd++qRla +f+e+L+arla+++s+ ONIVA11G23180.1 304 HTLLIHCAQAVATSDRRSATELLKQIKQNSSARGDATQRLACCFAEGLEARLAGTGSQ 361 679**************************************************96655 PP
2	GRAS	127.2	1.8e-39	367	522	218	373
GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311 v+++s+rd vL+ +++++P+v+v + + ++++ Fl+rf e+l +ys+ fd+l+a++pr+++er +Er +lgr + nv+acega+r+ r et ONIVA11G23180.1 367 VDSPSPRDMVLNNIRDMRPHVFVQCVVNGAYGAPFFLTRFRETLFFYSSQFDMLDATIPRDNDERLLIERDILGRCALNVIACEGADRVDRPET 460 456679************************************************************************************** PP GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++W r ++aG++++pl+ ++++ ++ ++k + + + ++ ++++l++gWk+r L+++S W ONIVA11G23180.1 461 YKQWLVRNHRAGLTQLPLQPQVVELVRDKVKKLYHKDFVIDVDHNWLLQGWKGRILYAMSTW 522 ******************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	8.734	277	365	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.6E-13	304	361	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.4E-37	367	522	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	16.431	373	503	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MAAAAPQLEE LVDLEPFSPS LFLDLPPTPH SDDPNDDDLI LPFISRMLME DDIDDKFFYQ 60 FPDHPALLHA QQPYAQILDA PSDDTTTNSS DDSASATTNN TTNSAAAANA SWPYDPIELS 120 QLLQSPPHPV SDNHDADVGD TRSAPEDDKD LKLLFSGADN MEMLNMAFLK GREEATKFLP 180 TNNTLFAGFD GASLLKTEPA VDEPTLMFGR SGGSGRGRKN RHGEEDDLEA ETGRSSKLMV 240 PPQEDTAAAS EMFDEIMFNG YEVIMKGMEE LRVAMDSEAE KKARNGGGAG RRAARAKAAV 300 VDLHTLLIHC AQAVATSDRR SATELLKQIK QNSSARGDAT QRLACCFAEG LEARLAGTGS 360 QDESVVVDSP SPRDMVLNNI RDMRPHVFVQ CVVNGAYGAP FFLTRFRETL FFYSSQFDML 420 DATIPRDNDE RLLIERDILG RCALNVIACE GADRVDRPET YKQWLVRNHR AGLTQLPLQP 480 QVVELVRDKV KKLYHKDFVI DVDHNWLLQG WKGRILYAMS TWVADRDHKS LF

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MAAAAPQLEE LVDLEPFSPS LFLDLPPTPH SDDPNDDDLI LPFISRMLME DDIDDKFFYQ  60
FPDHPALLHA QQPYAQILDA PSDDTTTNSS DDSASATTNN TTNSAAAANA SWPYDPIELS  120
QLLQSPPHPV SDNHDADVGD TRSAPEDDKD LKLLFSGADN MEMLNMAFLK GREEATKFLP  180
TNNTLFAGFD GASLLKTEPA VDEPTLMFGR SGGSGRGRKN RHGEEDDLEA ETGRSSKLMV  240
PPQEDTAAAS EMFDEIMFNG YEVIMKGMEE LRVAMDSEAE KKARNGGGAG RRAARAKAAV  300
VDLHTLLIHC AQAVATSDRR SATELLKQIK QNSSARGDAT QRLACCFAEG LEARLAGTGS  360
QDESVVVDSP SPRDMVLNNI RDMRPHVFVQ CVVNGAYGAP FFLTRFRETL FFYSSQFDML  420
DATIPRDNDE RLLIERDILG RCALNVIACE GADRVDRPET YKQWLVRNHR AGLTQLPLQP  480
QVVELVRDKV KKLYHKDFVI DVDHNWLLQG WKGRILYAMS TWVADRDHKS LF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137064	0.0	AC137064.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617900.1	0.0	scarecrow-like protein 9
TrEMBL	A0A0E0J5K1	0.0	A0A0E0J5K1_ORYNI; Uncharacterized protein
STRING	ONIVA11G23180.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	4e-54	GRAS family protein