 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ONIVA12G01340.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C3H |
| Protein Properties |
Length: 298aa MW: 34468.4 Da PI: 7.2213 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ONIVA12G01340.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19.1 | 2.4e-06 | 81 | 102 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27
Cr+++++G+Ck+ Ck++H++
ONIVA12G01340.1 81 CRYYMKFGECKHMTFCKYNHPK 102
********************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MAFAESIWTF MPGKKGSVVQ GPNTRTLTNA HDGILDDINC AQIAGKHVGD HSNCANVIKA 60
GVISLLGKLV QYPERPGEPF CRYYMKFGEC KHMTFCKYNH PKDRFSCKTT NTIRSESLCL 120
HDQVFVCICG EKLLFHTNFN TTAVKELVVF ALQRRNIKYC DIYVTWLIPM EYERMDELID 180
RAVRDNNNDL FYYVNLPPEL INSYKDTWVT FLSDFSRYII HQLLQYLNDT FGDPPSWIAD 240
ISWVPDMWKT YNYSPNNNST LWTPRYTLDL NSCSHFAKNF LNHFGREVTA ANLALMLG
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP014968 | 1e-105 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | BX000507 | 1e-105 | BX000507.2 Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
