PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G03540.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 432aa    MW: 48856.2 Da    PI: 6.6303
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G03540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.98.7e-26108203185
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++d
  ONIVA12G03540.1 108 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALLD 201
                      7*********************9877778889999**********************************************5499999999988 PP

         trihelix  84 ql 85 
                       +
  ONIVA12G03540.1 202 CM 203
                      77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.8E-20106230No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEGNNLPSGS LMRSNSGQMH APNPGKQGFD HTQMPGNLSM YVNQSTDSDH LSEFQFGELG  60
KVDHHHHHHH RQHAKNSMSD DEEHGVNEDA TDSQSGKGKK GAAWQRMKWT DSMVKLLITA  120
VSYTGEDPGA DSGAGKRNSA IMQKKGKWKA ISKVMGERGC SVSPQQCEDK FNDLNKRYKR  180
LTDILGRGTA CKIVENHALL DCMSNLSDKM KDDARKILSS KHLFYEEMCS YHNNNRVSLP  240
EDPALQRSLQ LALRCKDEHD LRRGTSGDAD EDDQSVDSDS EEENDEENYT LQGDKSALPM  300
HKRLRLMTDQ EDVGFGNSSS SHGCSRRSDS HGISLDINKA FPDGTNLALA QKDLAKQSAD  360
LEEQRLQIEV QAVYLAKQRL KWERFSKNKD RELEQMRLEN EKMRLENKRL ELEVRHKELE  420
LELKQKGSGN HA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619923.10.0trihelix transcription factor GT-3a
TrEMBLA0A0E0J7470.0A0A0E0J747_ORYNI; Uncharacterized protein
STRINGONIVA12G03540.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-101sequence-specific DNA binding transcription factors