PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G03970.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 477aa MW: 51686.6 Da PI: 5.3442

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G03970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.8	5e-07	233	254	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H ONIVA12G03970.1 233 FCGICGKGFKRDANLRMHMRGH 254 6*******************98 PP
2	zf-C2H2	10.7	0.0017	319	342	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C+ Cg k+Fs +Lk+H + + ONIVA12G03970.1 319 HVCGRCGaKRFSVMADLKTHEKHC 342 79******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.9E-5	230	257	No hit	No description
PROSITE profile	PS50157	11.759	232	259	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0091	232	254	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-5	233	258	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	234	254	IPR007087	Zinc finger, C2H2
SMART	SM00355	89	281	314	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	47	319	341	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010044	Biological Process	response to aluminum ion
GO:0043620	Biological Process	regulation of DNA-templated transcription in response to stress
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MDRDQMMNTM RDQAANLTSM NPLFYPFMAD DALLGMAPPP PQQLLPSVSI QHTDWSPDTM 60 LDNLTFIEEK IRQVKDVIRS MAGRRASSSS AATPEQQLVN ADLTCLIVQL ISTAGSLLPS 120 LKNSSFLSRT TPPPAAAAGA AQAVSLAAGE SSSSARNNET NREDEEEQMG SPDYDELFKG 180 WTNGGAMDEF VGAAGDEQDA RENPAAAAAA EEEEKYEVLQ LEEDEILAPH THFCGICGKG 240 FKRDANLRMH MRGHGDEYKS AAALAKPPPP PEGEEQPERR YSCPHAGCKR NRMHASFQPL 300 KTILCVKNHY KRSHCEKRHV CGRCGAKRFS VMADLKTHEK HCGRDRWLCS CGTTFSRKDK 360 LFAHVALFQG HAPALPPPPP PPPTTTTSTA ASGRRRHKQE ETEFTWGGGG GGDEFLDVKG 420 IAGVGSGSGG GDEFFSAGSF GAMDFGFGQL DASLAMLLPS ESEQFAGDHQ EENGDDK

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MDRDQMMNTM RDQAANLTSM NPLFYPFMAD DALLGMAPPP PQQLLPSVSI QHTDWSPDTM  60
LDNLTFIEEK IRQVKDVIRS MAGRRASSSS AATPEQQLVN ADLTCLIVQL ISTAGSLLPS  120
LKNSSFLSRT TPPPAAAAGA AQAVSLAAGE SSSSARNNET NREDEEEQMG SPDYDELFKG  180
WTNGGAMDEF VGAAGDEQDA RENPAAAAAA EEEEKYEVLQ LEEDEILAPH THFCGICGKG  240
FKRDANLRMH MRGHGDEYKS AAALAKPPPP PEGEEQPERR YSCPHAGCKR NRMHASFQPL  300
KTILCVKNHY KRSHCEKRHV CGRCGAKRFS VMADLKTHEK HCGRDRWLCS CGTTFSRKDK  360
LFAHVALFQG HAPALPPPPP PPPTTTTSTA ASGRRRHKQE ETEFTWGGGG GGDEFLDVKG  420
IAGVGSGSGG GDEFFSAGSF GAMDFGFGQL DASLAMLLPS ESEQFAGDHQ EENGDDK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269\|PubMed:19880795}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620753.1	0.0	zinc finger protein STAR3
Swissprot	Q2QX40	0.0	ART1_ORYSJ; Zinc finger protein STAR3
TrEMBL	A0A0E0J7A3	0.0	A0A0E0J7A3_ORYNI; Uncharacterized protein
TrEMBL	A0A3G1KL22	0.0	A0A3G1KL22_ORYSI; ART1
STRING	ONIVA12G03970.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	8e-78	C2H2 family protein

Publications ? help Back to Top
Xia J,Yamaji N,Kasai T,Ma JF Plasma membrane-localized transporter for aluminum in rice. Proc. Natl. Acad. Sci. U.S.A., 2010. 107(43): p. 18381-5 [PMID:20937890] Tsutsui T,Yamaji N,Feng Ma J Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice. Plant Physiol., 2011. 156(2): p. 925-31 [PMID:21502187] Famoso AN, et al. Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping. PLoS Genet., 2011. 7(8): p. e1002221 [PMID:21829395] Yokosho K,Yamaji N,Ma JF An Al-inducible MATE gene is involved in external detoxification of Al in rice. Plant J., 2011. 68(6): p. 1061-9 [PMID:21880027] Huang CF,Yamaji N,Chen Z,Ma JF A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice. Plant J., 2012. 69(5): p. 857-67 [PMID:22035218] Chen ZC,Yamaji N,Motoyama R,Nagamura Y,Ma JF Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice. Plant Physiol., 2012. 159(4): p. 1624-33 [PMID:22732245] Tsutsui T, et al. Comparative genome-wide transcriptional analysis of Al-responsive genes reveals novel Al tolerance mechanisms in rice. PLoS ONE, 2012. 7(10): p. e48197 [PMID:23110212] Chen ZC, et al. Adaptation to acidic soil is achieved by increased numbers of cis-acting elements regulating ALMT1 expression in Holcus lanatus. Plant J., 2013. 76(1): p. 10-23 [PMID:23773148] Xia J,Yamaji N,Ma JF A plasma membrane-localized small peptide is involved in rice aluminum tolerance. Plant J., 2013. 76(2): p. 345-55 [PMID:23888867] Yokosho K,Yamaji N,Fujii-Kashino M,Ma JF Functional Analysis of a MATE Gene OsFRDL2 Revealed its Involvement in Al-Induced Secretion of Citrate, but a Lower Contribution to Al Tolerance in Rice. Plant Cell Physiol., 2016. 57(5): p. 976-85 [PMID:26872836] Che J,Yamaji N,Shen RF,Ma JF An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice. Plant J., 2016. 88(1): p. 132-142 [PMID:27302336] Yokosho K,Yamaji N,Fujii-Kashino M,Ma JF Retrotransposon-Mediated Aluminum Tolerance through Enhanced Expression of the Citrate Transporter OsFRDL4. Plant Physiol., 2016. 172(4): p. 2327-2336 [PMID:27744299]