PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G05620.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23104.8 Da    PI: 9.8493
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G05620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.27e-261058250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     rien   rqvtf+kRr g+lKKA ELSvLCda+v viifss+gkl+e +
  ONIVA12G05620.1 10 RIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELA 58
                     8*********************************************965 PP
2K-box52.42.3e-188817216100
            K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        +q +  L++ei+ Lqr +R   G + ++++l  L+ Le+ Le  + +iR++K++++ ++i+ l++ke  l+e+n++L++k++e
  ONIVA12G05620.1  88 VAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKE 172
                      55677778**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.464161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-28174IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.44E-38373No hitNo description
PRINTSPR004047.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.45986176IPR002487Transcription factor, K-box
PfamPF014861.3E-1887170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MVRGKVQMRR IENPVHRQVT FCKRRGGLLK KARELSVLCD ADVGVIIFSS QGKLHELATN  60
GNMHNLVERY QSNVAGGQME PGALQRQVAE QGIFLLREEI DLLQRGLRST YGGGAGEMTL  120
DKLHALEKGL ELWIYQIRTT KMQMMQQEIQ FLRNKEGILK EANEMLQEKV KEQQKLYMSL  180
LDLHSQQPTQ PMTYGNRFFS I
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1777000.0AY177700.1 Oryza sativa (japonica cultivar-group) transcription factor MADS33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878024.11e-147MADS-box transcription factor 33 isoform X4
SwissprotQ2QW551e-146MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A0E0BQC51e-145A0A0E0BQC5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J7X21e-145A0A0E0J7X2_ORYNI; Uncharacterized protein
TrEMBLA2ZIY81e-145A2ZIY8_ORYSI; Uncharacterized protein
TrEMBLA3CFV11e-145A3CFV1_ORYSJ; Uncharacterized protein
STRINGOGLUM12G07130.11e-146(Oryza glumipatula)
STRINGONIVA12G05620.11e-146(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-60AGAMOUS-like 12