PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G05700.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 214aa    MW: 21928.1 Da    PI: 4.8508
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G05700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.8e-07546641
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     C+ +e+ e+   C  ++  lC+ C  + H+       Ht+v 
  ONIVA12G05700.1  5 CDACEQAEAAVLCCADEAALCRRCDAAVHSAnrlagkHTRVA 46
                     *****************************6688999999876 PP
2zf-B_box25.72.4e-086499437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                     ++C+ ++ek   +fC +++ llC++C ++ H    H
  ONIVA12G05700.1 64 PTCDICQEKTGYFFCLEDRALLCRSCDVAVHTAtaH 99
                     79****************************955663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.783147IPR000315B-box-type zinc finger
SMARTSM003363.2E-8547IPR000315B-box-type zinc finger
PfamPF006432.5E-5546IPR000315B-box-type zinc finger
CDDcd000211.36E-5547No hitNo description
Gene3DG3DSA:3.30.40.102.5E-45396IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS501199.25761108IPR000315B-box-type zinc finger
SMARTSM003362.7E-1161108IPR000315B-box-type zinc finger
PfamPF006432.0E-66499IPR000315B-box-type zinc finger
CDDcd000218.94E-56690No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHTRVALLLP SSSSAAAGDD  60
DHHPTCDICQ EKTGYFFCLE DRALLCRSCD VAVHTATAHA AAHRRFLITG VRIGGSVDAA  120
AAADVIVSPT SSSIAPAGSA SSNHAVAGAG AAGNNNGRSP APVRFSGGDG GVEPEQQWPW  180
SDVFAADDDD DVSAAMEQCY YHGISEPHSS SLTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678200.0AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618519.11e-119B-box zinc finger protein 23
TrEMBLA0A0E0J7Y51e-152A0A0E0J7Y5_ORYNI; Uncharacterized protein
TrEMBLA2ZIZ51e-152A2ZIZ5_ORYSI; Uncharacterized protein
STRINGONIVA12G05700.11e-153(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.19e-34light-regulated zinc finger protein 1