PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G06500.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 627aa    MW: 68074 Da    PI: 10.0758
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G06500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.12.9e-21369431163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s++
  ONIVA12G06500.1 369 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENASLRDEVNRIRKEYDELLSKN 431
                      89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.8E-26112192IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.8E-39218343No hitNo description
Gene3DG3DSA:1.20.5.1706.7E-17363428No hitNo description
PfamPF001703.0E-20369431IPR004827Basic-leucine zipper domain
SMARTSM003383.0E-21369433IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.415371434IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-10372428No hitNo description
CDDcd147029.26E-23374425No hitNo description
PROSITE patternPS000360376391IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MDSDADQNRG KGRKRAHQPN PDPSAHLASR PNLSHASLAY HSTPRPRETQ PQRNPTQPNP  60
ALAASPRVRY QPAQVVISSS PARPRARSRS PAPTTPDPEA PLRRPRDRGP RHKEQQPPAS  120
SSTATPAVYP DWANFQGYPP IPPHGFFPSP VASSPQGHPY MWGAQPMIPP YGTPPPPYVM  180
YPPGVYAHPS MPPGTTTTAA AAAAAGGETG GKSSEGKEKS PIKRSKGSLG SLNMITGKNS  240
TEHGKTSGAS ANGAISQSGE SGSESSSEGS EANSQNDSHH KESGQEQDGE VRSSQNGVSR  300
SPSQAKLNQT MAIMPMTSSG PVPAPTTNLN IGMDYWANTA SSTPAIHGKA TPTAAPGSMV  360
PGEQWVQDER ELKRQRRKQS NRESARRSRL RKQAECEELA QRAEVLKQEN ASLRDEVNRI  420
RKEYDELLSK NSSLKEKLED KQHKTDEAGV DNKLQHSVNC YQVVIILFWA GQHIDLQQMH  480
GKLLKAGKFG LMLLQVAGMD LWQNSCWERL AKTSPRTGLP LKLVQVLQLL EQGGQGKLTL  540
FLLIFWCFTL VIVIVWLEWA VGTIVALGSL MRSSNMSGAG MECLDRNSIT WLSGMVAVDS  600
ILSLGIRKVV LCGIFSCTIL MSMTKVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385391RRSRLRK
2385392RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU042950.0U04295.1 Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619718.10.0bZIP transcription factor 68 isoform X2
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLA0A0E0J8A60.0A0A0E0J8A6_ORYNI; Uncharacterized protein
STRINGONIVA12G06500.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-70basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]