PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G08480.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 80aa    MW: 9653.37 Da    PI: 9.9778
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G08480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.94.5e-0554792045
                     HHSSS--HHHHHHHHHHCTS-HHHHH CS
         Homeobox 20 eknrypsaeereeLAkklgLterqVk 45
                     ++ +yps+ e+  LAk++gL+ +q+ 
  ONIVA12G08480.1 54 YRWPYPSEMEKIALAKSMGLEPKQIN 79
                     4679********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-103080IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-153480IPR009057Homeodomain-like
CDDcd000863.59E-54180No hitNo description
PfamPF059209.2E-84980IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MLLPLWMLLY HHHRGDEDEA YFIGSMAELS KKRKKGKLLK EARQKLLTWW ELHYRWPYPS  60
EMEKIALAKS MGLEPKQINN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13034KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126203e-83CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644253.11e-20fused compound leaf 1 isoform X1
SwissprotP566677e-23KNX10_MAIZE; Homeobox protein knotted-1-like 10 (Fragment)
SwissprotQ10ED29e-21KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A0E0J9118e-51A0A0E0J911_ORYNI; Uncharacterized protein
STRINGONIVA12G08480.11e-51(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.16e-19KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kerstetter R, et al.
    Sequence analysis and expression patterns divide the maize knotted1-like homeobox genes into two classes.
    Plant Cell, 1994. 6(12): p. 1877-87
    [PMID:7866030]