PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G09610.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 395aa    MW: 42315.5 Da    PI: 7.7492
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G09610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-116993327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++ C++++rtG C++G +CkF+H+p
  ONIVA12G09610.1 69 EPDCSYYMRTGLCRFGMTCKFNHPP 93
                     789********************97 PP
2zf-CCCH391.3e-12114138327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  ONIVA12G09610.1 114 QPECQYYLKTGTCKFGATCKFHHPR 138
                      799********************96 PP
3zf-CCCH39.77.9e-13261286227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  ONIVA12G09610.1 261 DQPECQFYMKTGDCKFGAVCKFHHPK 286
                      689*********************96 PP
4zf-CCCH37.73.4e-12306332127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C f++r+G+Ck+G++CkF H++
  ONIVA12G09610.1 306 PGEPVCTFYSRYGICKFGPNCKFDHPM 332
                      5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-56693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2816694IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-86993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-57094IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-47292IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441111139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6113140IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5117139IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.24157178IPR000571Zinc finger, CCCH-type
SMARTSM0035644157181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511259287IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5259286IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9261286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6262289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5265287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99305333IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7305332IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6309334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4310330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAAGAGAGGG GGEGDSNGGG TSPGGVSAAA PAIGPHHLGV AAAEEAMWQM TLGGGESMES  60
TPYPERIGEP DCSYYMRTGL CRFGMTCKFN HPPNRKLAVA AARMNGEYPY RVGQPECQYY  120
LKTGTCKFGA TCKFHHPREK AALANRVQLN VLGYPMRPNE KECAYYLRTG QCKFASTCYA  180
QVIVPQGLVQ VPGWNPYAAQ MGSSSPDDQQ RTPVTTQYYG SRQSETGGMG DHGMYQSYQG  240
GSVPVGVYTV QGENIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERLV PAPNCALNSL  300
GLPLRPGEPV CTFYSRYGIC KFGPNCKFDH PMGTLMYGSA TSPRGDVSSM HYQLSPSPGH  360
PGILLDGGSG RSHRVPQSDS QQIPSGDGNA EREAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115110.0AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620174.10.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0E0J9G30.0A0A0E0J9G3_ORYNI; Uncharacterized protein
STRINGORUFI12G10410.10.0(Oryza rufipogon)
STRINGOS12T0405100-010.0(Oryza sativa)
STRINGORGLA12G0088700.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-135zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]