PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G09610.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 513aa    MW: 54656.4 Da    PI: 8.7353
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G09610.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.3e-11128152327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++++rtG C++G +CkF+H+p
  ONIVA12G09610.3 128 EPDCSYYMRTGLCRFGMTCKFNHPP 152
                      789********************97 PP
2zf-CCCH38.61.8e-12173197327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  ONIVA12G09610.3 173 QPECQYYLKTGTCKFGATCKFHHPR 197
                      799********************96 PP
3zf-CCCH30.85e-10219243327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+ ++CkF+H++
  ONIVA12G09610.3 219 EKECAYYLRTGQCKFASTCKFHHPQ 243
                      679********************97 PP
4zf-CCCH39.31.1e-12379404227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  ONIVA12G09610.3 379 DQPECQFYMKTGDCKFGAVCKFHHPK 404
                      689*********************96 PP
5zf-CCCH37.34.7e-12424450127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C f++r+G+Ck+G++CkF H++
  ONIVA12G09610.3 424 PGEPVCTFYSRYGICKFGPNCKFDHPM 450
                      5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-5125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281125153IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8128152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5129153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001131151IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6170197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441170198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6172199IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10173197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5176198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6215244IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4216243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324216244IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-7219243IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5377404IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511377405IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9379404IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5380407IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4383405IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7423450IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99423451IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9425450IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6427452IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4428448IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MAAGAGAGGG GGEGDSNGGG TSPGGVSAAA PAIGPHHLGV AAAEGGGGVI CSVLLVRGSR  60
DGAAMSRAVG VCGRSWGPRG RWLVRVPRWS LGGGDDSMGT PGNKAMWQMT LGGGESMEST  120
PYPERIGEPD CSYYMRTGLC RFGMTCKFNH PPNRKLAVAA ARMNGEYPYR VGQPECQYYL  180
KTGTCKFGAT CKFHHPREKA ALANRVQLNV LGYPMRPNEK ECAYYLRTGQ CKFASTCKFH  240
HPQPSNTMVA IRNSMYSPGQ SATSPGQHTY PGAVTNWTLS RSASFIASPR WPGHSGYAQV  300
IVPQGLVQVP GWNPYAAQMG SSSPDDQQRT PVTTQYYGSR QSETGGMGDH GMYQSYQGGS  360
VPVGVYTVQG ENIFPERPDQ PECQFYMKTG DCKFGAVCKF HHPKERLVPA PNCALNSLGL  420
PLRPGEPVCT FYSRYGICKF GPNCKFDHPM GTLMYGSATS PRGDVSSMHY QLSPSPGHPG  480
ILLDGGSGRS HRVPQSDSQQ IPSGDGNAER EAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115110.0AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620174.10.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0E0J9G50.0A0A0E0J9G5_ORYNI; Uncharacterized protein
STRINGONIVA12G09610.30.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-152zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]