PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G13790.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 234aa    MW: 26646.8 Da    PI: 4.8045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G13790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-101601991054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++RR+riN+++  L+el+P+      +K++ +++Le+A++Y+k L
  ONIVA12G13790.1 160 KNRRQRINERLRILQELIPNG-----TKVDISTMLEEAIQYVKFL 199
                      89*****************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.615150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-13153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-11154210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.85E-11159204No hitNo description
PfamPF000101.2E-7160199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MPANLKPFQA PTQYIYTFSL QLQFAPYSQN HCSGSAMECS SFEAICNESE MIAHLQSLFW  60
SSSDADPCFG SSSFSLISSE GYDTMTTEFV NSSTNVCFDY QDDSFVSAED TTIGNKRKVQ  120
MDTENELMMN RSKEVRTKMS VSKACKHSVS AESSQSYYAK NRRQRINERL RILQELIPNG  180
TKVDISTMLE EAIQYVKFLH LQIKLLSSDE MWMYAPLAFD SGNNRLYQNS LSQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317590.0AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619477.21e-174transcription factor SPATULA isoform X1
TrEMBLA0A0E0JAX41e-175A0A0E0JAX4_ORYNI; Uncharacterized protein
STRINGONIVA12G13790.11e-176(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145082123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-35bHLH family protein